Gene Card
Gene overview
cDNA / CDS / Protein Sequences
8847 bp · LXL04_026816|LXL04_026816|OH1004|cDNA
atggaagaagaagaagaaaaactagaaaatgtAGACATTTCTGGTGGCTATTCATTAGCAGAAGTAGATTCAAGAGCGGAATCATCTGATTCAGATCCTGGTACTGTTAATGTTACCATTACAGATGATGTGGGAAGAGTTGATTCCAAAAGTGGATATGTAGATGACGGCATGTTTGAGCAGGTATCATTAGATAAAGAGAAGATTGTTTCAGATCTGGATAATCTAAACATCTCAATGGAGGTTGATTCTTCACATTC...
8847 bp · LXL04_026816|LXL04_026816|OH1004|CDS
ATGGAAGAAGAAGAAGAAAAACTAGAAAATGTAGACATTTCTGGTGGCTATTCATTAGCAGAAGTAGATTCAAGAGCGGAATCATCTGATTCAGATCCTGGTACTGTTAATGTTACCATTACAGATGATGTGGGAAGAGTTGATTCCAAAAGTGGATATGTAGATGACGGCATGTTTGAGCAGGTATCATTAGATAAAGAGAAGATTGTTTCAGATCTGGATAATCTAAACATCTCAATGGAGGTTGATTCTTCACATTC...
Protein
Download Protein FASTA2948 aa · LXL04_026816|LXL04_026816|OH1004|PROTEIN
MEEEEEKLENVDISGGYSLAEVDSRAESSDSDPGTVNVTITDDVGRVDSKSGYVDDGMFEQVSLDKEKIVSDLDNLNISMEVDSSHSPPVAQLHQDNNRNSNSNSNVSSHEAGVQSPRLSEQSSTRTSYDSPSYADNRHSQSLSQSPSKPKHKPMPNVSPELLHLVDSVIMGKRECMESLKNIISGVEPFGDNEEPESISFLVVDSLLATMGGVESFEEDEDNNPPSVMLNSKAAVVSGELIPWLPWLSDTEGFMSPRTR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026816 |
|---|---|
| TK1151 ID | TkA07G009710 |
| OH-1004 ID | LXL04_026816 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.900 |
| Protein coverage (%) | TK1151 98.523 / OH-1004 58.820Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026816 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:3356954-3376788 (+) | |||||||||
| Description | Similar to BCHC2: BEACH domain-containing protein C2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005634 nucleus Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component GO:0070821 tertiary granule membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G45540 ath:AT3G60920 hsa:23218 hsa:65065 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15787.12DUF4704656-961 aaPF15787.12DUF47041141-1256 aaPF14844.13PH_BEACH2104-2204 aaPF02138.24Beach2232-2508 aaPF24814.2WD40_Prp192630-2803 aaPF24807.2WD40_CDC20-Fz2635-2703 aaPF25173.2Beta-prop_WDR3_1st2636-2707 aaPF24817.2WD40_WDHD1_1st2639-2712 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026816 | PF15787.12 | DUF4704 | 656 | 961 | 3.4e-68 | 231.3 |
| LXL04_026816 | PF15787.12 | DUF4704 | 1141 | 1256 | 3.4e-68 | 231.3 |
| LXL04_026816 | PF14844.13 | PH_BEACH | 2104 | 2204 | 1.2e-26 | 93.5 |
| LXL04_026816 | PF02138.24 | Beach | 2232 | 2508 | 2.3e-121 | 405.1 |
| LXL04_026816 | PF24814.2 | WD40_Prp19 | 2630 | 2803 | 1.2e-09 | 38.4 |
| LXL04_026816 | PF24807.2 | WD40_CDC20-Fz | 2635 | 2703 | 8.5e-06 | 26.0 |
| LXL04_026816 | PF25173.2 | Beta-prop_WDR3_1st | 2636 | 2707 | 4.6e-13 | 50.0 |
| LXL04_026816 | PF24817.2 | WD40_WDHD1_1st | 2639 | 2712 | 1.4e-07 | 31.7 |
| LXL04_026816 | PF20426.5 | NBCH_WD40 | 2643 | 2845 | 1.4e-21 | 77.5 |
| LXL04_026816 | PF25174.2 | Beta-prop_THOC3 | 2653 | 2713 | 2e-09 | 37.6 |
| LXL04_026816 | PF25172.2 | Beta-prop_WDR3_2nd | 2653 | 2704 | 6.4e-07 | 29.6 |
| LXL04_026816 | PF23381.2 | Beta-prop_IFT122_1st | 2654 | 2706 | 2.8e-13 | 50.6 |
| LXL04_026816 | PF25175.2 | Beta-prop_WDR5 | 2655 | 2709 | 5.7e-11 | 42.9 |
| LXL04_026816 | PF25047.1 | Beta-prop_TEP1_2nd | 2665 | 2712 | 2.8e-10 | 40.5 |
| LXL04_026816 | PF00400.39 | WD40 | 2673 | 2703 | 3e-12 | 47.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.