LXL04_026710 | RubberDandelionOmics

Gene overview

LXL04_026710

Reference: OH-1004 Chr: Chr06 Coordinates: 1738530-1753358 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3306 bp · LXL04_026710|LXL04_026710|OH1004|cDNA

ATGTATATGGCGTACGGATGGCCTCAGGTGATCCCCCTCGAATTAGGGCTATGTCCAACTTCGCAGCAGATCATATACCTTAAAGTTGTTGATCGTTTATTGCTAGTTGTTTGCCCTTCTCATTTGGAGCTATGGAGCTCTTCTCAGCATAGGGTGCGATTAGGGAAGTACAAGCGAGATCCAGAATCAATAGCAAGAGAAGGGGAGAATATACAGGCTATCTGGAGCCCTGATACCAAATTAATAGCTGTTCTTACATC...

CDS

Download CDS FASTA

3306 bp · LXL04_026710|LXL04_026710|OH1004|CDS

ATGTATATGGCGTACGGATGGCCTCAGGTGATCCCCCTCGAATTAGGGCTATGTCCAACTTCGCAGCAGATCATATACCTTAAAGTTGTTGATCGTTTATTGCTAGTTGTTTGCCCTTCTCATTTGGAGCTATGGAGCTCTTCTCAGCATAGGGTGCGATTAGGGAAGTACAAGCGAGATCCAGAATCAATAGCAAGAGAAGGGGAGAATATACAGGCTATCTGGAGCCCTGATACCAAATTAATAGCTGTTCTTACATC...

Protein

Download Protein FASTA

1101 aa · LXL04_026710|LXL04_026710|OH1004|PROTEIN

MYMAYGWPQVIPLELGLCPTSQQIIYLKVVDRLLLVVCPSHLELWSSSQHRVRLGKYKRDPESIAREGENIQAIWSPDTKLIAVLTSSFHLHIFKVQFMEKQIHIGGKQPSNLSLASISLLMNEQIPISEKDMTMSNLICDSKNLLVGLSNGTLYNMSWKGEFHGSLDLDFHFNTENGHTKLSNGVGSMSRNSAITYLEFSLALRLLFVLFSDGHLVLCSVSKRGLKQVDSDSVKPEYRVGSGDAVCASVSPDQQILAVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026710`
TK1151 ID	TkA07G002910
OH-1004 ID	LXL04_026710
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.900
Protein coverage (%)	TK1151 97.129 / OH-1004 70.663 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_026710`
Location	Chr06:1738530-1753358 (-)
Description	Similar to RIC1: Guanine nucleotide exchange factor subunit RIC1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026710` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0003330 regulation of extracellular matrix constituent secretion Biological Process GO:0006886 intracellular protein transport Biological Process GO:0032483 regulation of Rab protein signal transduction Biological Process GO:0035418 protein localization to synapse Biological Process GO:0042147 retrograde transport, endosome to Golgi Biological Process GO:0042177 negative regulation of protein catabolic process Biological Process GO:0043547 positive regulation of GTPase activity Biological Process GO:0050808 synapse organization Biological Process GO:0060078 regulation of postsynaptic membrane potential Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	cel:CELE_R06F6.8 dme:Dmel_CG9063 hsa:57589 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.498

Rank 1 · LXL04_026710 · OH-1004

Nucleus0.285

Rank 2 · LXL04_026710 · OH-1004

Golgi apparatus0.206

Rank 3 · LXL04_026710 · OH-1004

Lysosome / Vacuole0.150

Rank 4 · LXL04_026710 · OH-1004

Endoplasmic reticulum0.090

Rank 5 · LXL04_026710 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24807.2WD40_CDC20-Fz189-332 aa

PF23414.2Beta-prop_EML_2190-333 aa

PF25174.2Beta-prop_THOC3192-333 aa

PF25171.2Beta-prop_WDR36-Utp21_1st210-337 aa

PF23381.2Beta-prop_IFT122_1st213-329 aa

PF24814.2WD40_Prp19244-353 aa

PF25440.3Beta-prop_RIC1_2nd410-738 aa

PF07064.20RIC1745-911 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026710	`PF24807.2`	WD40_CDC20-Fz	189	332	3e-08	34.0
LXL04_026710	`PF23414.2`	Beta-prop_EML_2	190	333	1.3e-07	32.1
LXL04_026710	`PF25174.2`	Beta-prop_THOC3	192	333	1.6e-10	41.2
LXL04_026710	`PF25171.2`	Beta-prop_WDR36-Utp21_1st	210	337	3.4e-06	27.4
LXL04_026710	`PF23381.2`	Beta-prop_IFT122_1st	213	329	5.2e-10	39.8
LXL04_026710	`PF24814.2`	WD40_Prp19	244	353	1.7e-06	28.1
LXL04_026710	`PF25440.3`	Beta-prop_RIC1_2nd	410	738	2.6e-85	287.4
LXL04_026710	`PF07064.20`	RIC1	745	911	1.5e-50	171.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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