LXL04_026415 | RubberDandelionOmics

Gene overview

LXL04_026415

Reference: OH-1004 Chr: Chr05 Coordinates: 125977189-125985764 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1752 bp · LXL04_026415|LXL04_026415|OH1004|cDNA

ATGGCAAGCCCGCTGTCGCCGGCGGCGGTCAGTGGCGGCAGGACGGCGGTCTCCGGCGGAGGCATACCACATTCCCCCGGAACGACACTACGCGTCCCCTTACTTCGAAACCTGTTCAATGGGGTCGGAAATGGAAGCAATATGACGGCGATAGGCAATTCCGGCGAACCAATGGGTGAAGAACGGCGACCGgcagccggcagccctagctgccaaggctgCCGTTCTCGCAGCGCCAGTGGTCGCGGCGCCCGTCTTCC...

CDS

Download CDS FASTA

1752 bp · LXL04_026415|LXL04_026415|OH1004|CDS

ATGGCAAGCCCGCTGTCGCCGGCGGCGGTCAGTGGCGGCAGGACGGCGGTCTCCGGCGGAGGCATACCACATTCCCCCGGAACGACACTACGCGTCCCCTTACTTCGAAACCTGTTCAATGGGGTCGGAAATGGAAGCAATATGACGGCGATAGGCAATTCCGGCGAACCAATGGGTGAAGAACGGCGACCGGCAGCCGGCAGCCCTAGCTGCCAAGGCTGCCGTTCTCGCAGCGCCAGTGGTCGCGGCGCCCGTCTTCC...

Protein

Download Protein FASTA

583 aa · LXL04_026415|LXL04_026415|OH1004|PROTEIN

MASPLSPAAVSGGRTAVSGGGIPHSPGTTLRVPLLRNLFNGVGNGSNMTAIGNSGEPMGEERRPAAGSPSCQGCRSRSASGRGARLPPFALLSHSPAPSRCACLLPDAYFPLDSALMSDSGVFELLWSLRGEDEGDERSRLSPSRFKNLTGTNHDEFDGNSGPTINSTTNNNVVVNVRNKLDEDLLLTWAGVQQKRSSEISPMEVGYITGRDFLLEHLHLKNPSSRRLLLPNDLQPSADLRRAIAHLRRSPSRYLLLPRE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026415`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026415

Location Chr05:125977189-125985764 (-)

Description Similar to MPC4: Mitochondrial pyruvate carrier 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g22310`	Mediates the uptake of pyruvate into mitochondria.	No verified direct reference in this release
`At4g05590`	Mediates the uptake of pyruvate into mitochondria.	NRGA1, a putative mitochondrial pyruvate carrier, mediates ABA regulation of guard cell ion channels and drought stress responses in Arabidopsis.2014 · DOI: 10.1093/mp/ssu061
`At4g14695`	Mediates the uptake of pyruvate into mitochondria.	No verified direct reference in this release
`At4g12420`	May be a monocopper oxidase of unknown specificity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026415 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0006850 pyruvate import into mitochondria Biological Process

GO:0009932 cell tip growth Biological Process

GO:2000070 regulation of response to water deprivation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT4G05590

ath:AT4G12420

ath:AT4G14695

ath:AT4G22310

mmu:70456

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.371

Rank 1 · LXL04_026415 · OH-1004

Cytoplasm0.356

Rank 2 · LXL04_026415 · OH-1004

Mitochondrion0.149

Rank 3 · LXL04_026415 · OH-1004

Cell membrane0.136

Rank 4 · LXL04_026415 · OH-1004

Endoplasmic reticulum0.093

Rank 5 · LXL04_026415 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07732.22Cu-oxidase_3162-198 aa

PF03650.20MPC500-547 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026415	`PF07732.22`	Cu-oxidase_3	162	198	6e-08	33.5
LXL04_026415	`PF03650.20`	MPC	500	547	1.2e-08	35.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O49636`	Arabidopsis thaliana	Mitochondrial pyruvate carrier 4	55.263%	Swiss-Prot	weak database homology
`Q8LD38`	Arabidopsis thaliana	Mitochondrial pyruvate carrier 3	45.122%	Swiss-Prot	weak database homology
`Q8L7H8`	Arabidopsis thaliana	Mitochondrial pyruvate carrier 2	50.000%	Swiss-Prot	weak database homology
`Q9SU40`	Arabidopsis thaliana	Monocopper oxidase-like protein SKU5	75.676%	Swiss-Prot	weak database homology

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