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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_026026
Reference: OH-1004 Chr: Chr05 Coordinates: 119902525-119904942 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2418 bp · LXL04_026026|LXL04_026026|OH1004|cDNA

ATGCTCTTTTCTGCACCTTCTCATTCATCATCATTCGCCAAGGTAACACTCCCTCACCTCCTCAATTTCATATCATCCTTCGATTTCCTTGCATTTACATCAACTCGCTTCTACTCTACTGTCTCTACATCACCACCATCATCACAAACACAGTTAATTACCCACATAATAACTTCATTTCGACAAAAAGACCACAATCAACACCTGTTAAACCATTCTTCTATCTCAAATTTGAGACCCCATGAAGTAGAGCCTATCCT...

CDS

Download CDS FASTA

2418 bp · LXL04_026026|LXL04_026026|OH1004|CDS

ATGCTCTTTTCTGCACCTTCTCATTCATCATCATTCGCCAAGGTAACACTCCCTCACCTCCTCAATTTCATATCATCCTTCGATTTCCTTGCATTTACATCAACTCGCTTCTACTCTACTGTCTCTACATCACCACCATCATCACAAACACAGTTAATTACCCACATAATAACTTCATTTCGACAAAAAGACCACAATCAACACCTGTTAAACCATTCTTCTATCTCAAATTTGAGACCCCATGAAGTAGAGCCTATCCT...

Protein

Download Protein FASTA

805 aa · LXL04_026026|LXL04_026026|OH1004|PROTEIN

MLFSAPSHSSSFAKVTLPHLLNFISSFDFLAFTSTRFYSTVSTSPPSSQTQLITHIITSFRQKDHNQHLLNHSSISNLRPHEVEPILFGLRATPALAIRFFEWSERHLGFHHHNLESFCGLIHLLLEKRMFDDARRVFDKMTERFGDFDCFNAFRIGLTSYHSNASTVYSFLVANYSRIGNIDKAIELFFQMSRSGISISPYALMKIMNSLVDMNRIDVISDVYKIIANEHRENTDLCSNLYGYVMGGFFKKGEPSFGFE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_026026
TK1151 IDTkA06G031190
OH-1004 IDLXL04_026026
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)56.800
Protein coverage (%)TK1151 8.681 / OH-1004 10.932
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_026026
LocationChr05:119902525-119904942 (-)
DescriptionSimilar to At1g31840: Putative pentatricopeptide repeat-containing protein At1g31840
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31840 Putative pentatricopeptide repeat-containing protein At1g31840. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At1g62930 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic. No verified direct reference in this release
At1g62670 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q76C99 Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026026 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G31840
ath:AT5G39710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.825
Rank 1 · LXL04_026026 · OH-1004
Plastid0.080
Rank 2 · LXL04_026026 · OH-1004
Nucleus0.042
Rank 3 · LXL04_026026 · OH-1004
Cytoplasm0.031
Rank 4 · LXL04_026026 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_026026 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2242-286 aa
PF13812.13PPR_3271-321 aa
PF23276.3TPR_24292-405 aa
PF12854.14PPR_1304-335 aa
PF13041.13PPR_2307-355 aa
PF01535.27PPR310-340 aa
PF12854.14PPR_1339-362 aa
PF17177.11PPR_long360-462 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_026026PF13041.13PPR_22422867.5e-128417.3
LXL04_026026PF13812.13PPR_32713211.7e-53179.2
LXL04_026026PF23276.3TPR_242924051.1e-34119.9
LXL04_026026PF12854.14PPR_13043353e-120392.3
LXL04_026026PF13041.13PPR_23073557.5e-128417.3
LXL04_026026PF01535.27PPR3103407.7e-105336.8
LXL04_026026PF12854.14PPR_13393623e-120392.3
LXL04_026026PF17177.11PPR_long3604626.1e-2382.0
LXL04_026026PF13812.13PPR_33694221.7e-53179.2
LXL04_026026PF29070.1MSC6_N3734672.9e-2383.3
LXL04_026026PF13041.13PPR_23784267.5e-128417.3
LXL04_026026PF01535.27PPR3804107.7e-105336.8
LXL04_026026PF12854.14PPR_14094383e-120392.3
LXL04_026026PF13041.13PPR_24124617.5e-128417.3
LXL04_026026PF01535.27PPR4154447.7e-105336.8
LXL04_026026PF12854.14PPR_14775073e-120392.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C6S6Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g3184038.368%Swiss-Protmoderate database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971025.480%Swiss-Protweak database homology
Q9LQ14Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62930, chloroplastic28.548%Swiss-Protweak database homology
Q9SXD1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62670, mitochondrial29.070%Swiss-Protweak database homology
Q76C99Oryza sativa subsp. indicaProtein Rf1, mitochondrial26.917%Swiss-Protweak database homology

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