LXL04_025892 | RubberDandelionOmics

Gene overview

LXL04_025892

Reference: OH-1004 Chr: Chr05 Coordinates: 118217574-118235191 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7464 bp · LXL04_025892|LXL04_025892|OH1004|cDNA

ATGGCTTTCTCCGGAGCCAAAATTATCCAGCCTCTCTCTCTCCACGCCAGTACCAGTATCAGATCCGACAAGAACCTTCTCTGCGATCCCGCGGCCAAGCCTATCGCCACTTCATCCCCTTTCCTCGGATCAACCCGGACCCTCCGCCTTAAACAATCCGTTGTAGCTCCTCAATGTCGACCTGCTTCCCGTATCGTTGCTGTCTCCGAAGTTGTTAAGGAAAAGAAGCTCAAATCGAAAACAAATCTCCTACTTACAAA...

CDS

Download CDS FASTA

7464 bp · LXL04_025892|LXL04_025892|OH1004|CDS

ATGGCTTTCTCCGGAGCCAAAATTATCCAGCCTCTCTCTCTCCACGCCAGTACCAGTATCAGATCCGACAAGAACCTTCTCTGCGATCCCGCGGCCAAGCCTATCGCCACTTCATCCCCTTTCCTCGGATCAACCCGGACCCTCCGCCTTAAACAATCCGTTGTAGCTCCTCAATGTCGACCTGCTTCCCGTATCGTTGCTGTCTCCGAAGTTGTTAAGGAAAAGAAGCTCAAATCGAAAACAAATCTCCTACTTACAAA...

Protein

Download Protein FASTA

2487 aa · LXL04_025892|LXL04_025892|OH1004|PROTEIN

MAFSGAKIIQPLSLHASTSIRSDKNLLCDPAAKPIATSSPFLGSTRTLRLKQSVVAPQCRPASRIVAVSEVVKEKKLKSKTNLLLTKEEGLEVYEDMILGRAFEDMCAQMYYRGKMFGFVHLYNGQEAVSSGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKKTGCCRGQGGSMHMFSSEHNVLGGFAFIGEGIPVATGAAFSSKYRKEVLKQSDCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025892`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025892

Location Chr05:118217574-118235191 (+)

Description Similar to PDH-E1 ALPHA: Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01090`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0119400`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025892 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0045254 pyruvate dehydrogenase complex Cellular Component

GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G01090

dosa:Os04g0119400

rco:RC0347

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.582

Rank 1 · LXL04_025892 · OH-1004

Nucleus0.415

Rank 2 · LXL04_025892 · OH-1004

Cell membrane0.082

Rank 3 · LXL04_025892 · OH-1004

Endoplasmic reticulum0.064

Rank 4 · LXL04_025892 · OH-1004

Mitochondrion0.057

Rank 5 · LXL04_025892 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00676.26E1_dh97-397 aa

PF00646.39F-box534-573 aa

PF00646.39F-box1170-1208 aa

PF00646.39F-box1571-1609 aa

PF00646.39F-box1972-2010 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025892	`PF00676.26`	E1_dh	97	397	2.5e-81	273.7
LXL04_025892	`PF00646.39`	F-box	534	573	7.2e-24	83.4
LXL04_025892	`PF00646.39`	F-box	1170	1208	7.2e-24	83.4
LXL04_025892	`PF00646.39`	F-box	1571	1609	7.2e-24	83.4
LXL04_025892	`PF00646.39`	F-box	1972	2010	7.2e-24	83.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O24457`	Arabidopsis thaliana	Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic	80.370%	Swiss-Prot	weak database homology
`Q7XTJ3`	Oryza sativa subsp. japonica	Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic	80.052%	Swiss-Prot	weak database homology

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