LXL04_025046 | RubberDandelionOmics

Gene overview

LXL04_025046

Reference: OH-1004 Chr: Chr05 Coordinates: 104738837-104741958 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1913 bp · LXL04_025046|LXL04_025046|OH1004|cDNA

gaAACAGAAAAGACCCTCTTCACACTACATACACCACCCAATCATTATCACATTCACACTCAATATATATGAATCTAATTCCATCATTACACTAACCTCCTCATACAAAttcctctctccctctctctccatCTTTCTTACACCCACTTAGTGTGTGTATTCATGTTCATGCAGGTTTAGAGAAGGGCAAAATTGGAACAAAAATGATTTATACCCTTCTTCTAGTTCATGTTTTGGCCCTGTTTGGGTTTGTTTTGGGG...

CDS

Download CDS FASTA

1710 bp · LXL04_025046|LXL04_025046|OH1004|CDS

ATGATTTATACCCTTCTTCTAGTTCATGTTTTGGCCCTGTTTGGGTTTGTTTTGGGGGATGTAGGGCTCGTGAGTCCATCTCAGTTGGAAATGTTTGTGGATGAAATTCCAGATATGCCCAGAATCAAAGGCTATGATGTTCTTCATGGTGTTCCAGTTTCCAAAACTCTCAAAATCTCCATGTATCAAAAGTCTTGGAAATTTCACAAAGATCTCCCGCAAACCAAGGTGTTTGCATTCGGTGAAACGAGGCGCACTGC...

Protein

Download Protein FASTA

569 aa · LXL04_025046|LXL04_025046|OH1004|PROTEIN

MIYTLLLVHVLALFGFVLGDVGLVSPSQLEMFVDEIPDMPRIKGYDVLHGVPVSKTLKISMYQKSWKFHKDLPQTKVFAFGETRRTATVPGPTIETVHGVSTHVTWQNLLPSKHILPWDPTIPTAIPRTKNGVPTVVHLHGGIDEPESDGNSNSWFTARFKERGPMWTKKTYHYHNQQQPGNLYYHDHAMGLTRVNLLAGLFGAYIIRHHEVESPLRLPSGDEFDRPLVVFDRSFLSSGSLYMDPTGNNPSIHPQWQPEY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025046`
TK1151 ID	TkA06G085010
OH-1004 ID	LXL04_025046
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025046

Location Chr05:104738837-104741958 (+)

Description Similar to LPR1: Multicopper oxidase LPR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g23010`	Multicopper oxidase that may be involved in copper homeostasis and oxidative stress response, and that is necessary for root growth inhibition by low phosphate conditions.	No verified direct reference in this release
`At1g71040`	Multicopper oxidase that may be involved in copper homeostasis and oxidative stress response, and that is necessary for root growth inhibition by low phosphate conditions.	Root tip contact with low-phosphate media reprograms plant root architecture.2007 · DOI: 10.1038/ng2041

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0126100`	Multicopper oxidase that may play a role in the maintenance of inorganic phosphate homeostasis.	No verified direct reference in this release
`Os01g0126900`	Multicopper oxidase that may play a role in the maintenance of inorganic phosphate homeostasis.	No verified direct reference in this release
`Os01g0126200`	Multicopper oxidase that may play a role in the maintenance of inorganic phosphate homeostasis.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025046 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010073 meristem maintenance Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor Molecular Function

KEGG gene cross-reference

ath:AT1G23010

ath:AT1G71040

dosa:Os01g0126100

dosa:Os01g0126200

dosa:Os01g0126900

osa:4326010

osa:4326011

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.786

Rank 1 · LXL04_025046 · OH-1004

Cell membrane0.075

Rank 2 · LXL04_025046 · OH-1004

Cytoplasm0.069

Rank 3 · LXL04_025046 · OH-1004

Endoplasmic reticulum0.048

Rank 4 · LXL04_025046 · OH-1004

Lysosome / Vacuole0.041

Rank 5 · LXL04_025046 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07732.22Cu-oxidase_3134-210 aa

PF07731.21Cu-oxidase_2411-565 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025046	`PF07732.22`	Cu-oxidase_3	134	210	3.9e-06	27.6
LXL04_025046	`PF07731.21`	Cu-oxidase_2	411	565	1.4e-10	41.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4I4K5`	Arabidopsis thaliana	Multicopper oxidase LPR1	67.254%	Swiss-Prot	strong database homology
`Q949X9`	Arabidopsis thaliana	Multicopper oxidase LPR2	66.316%	Swiss-Prot	strong database homology
`Q9AWU4`	Oryza sativa subsp. japonica	Multicopper oxidase LPR1 homolog 1	58.379%	Swiss-Prot	strong database homology
`Q7F757`	Oryza sativa subsp. japonica	Multicopper oxidase LPR1 homolog 4	55.413%	Swiss-Prot	strong database homology
`Q5ZE07`	Oryza sativa subsp. japonica	Multicopper oxidase LPR1 homolog 2	56.560%	Swiss-Prot	strong database homology

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