Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1212 bp · LXL04_024672|LXL04_024672|OH1004|cDNA
ATGGCTTCAGAGAAGGCGAAGGAGCTCGTTTCATCAAACACTGTCGTCGTCTTCAGAATCGTAAGGAATTTAGCGAACTTTTATGGATTTGAAGGATTGATTTGTCAAATCTATTGTCCTTTCTGTGTGGATGTTAAGAAGCTGCTTACGGAGCTTAATGCTTCGTTCAAAGCCATTGAGATTGACCGAGAAATTTTGCAAACTTCATCAATTGTAAGGATTGTCATAAATACAAGGACTATGAACTCCAGCTACAATGT...
1212 bp · LXL04_024672|LXL04_024672|OH1004|CDS
ATGGCTTCAGAGAAGGCGAAGGAGCTCGTTTCATCAAACACTGTCGTCGTCTTCAGAATCGTAAGGAATTTAGCGAACTTTTATGGATTTGAAGGATTGATTTGTCAAATCTATTGTCCTTTCTGTGTGGATGTTAAGAAGCTGCTTACGGAGCTTAATGCTTCGTTCAAAGCCATTGAGATTGACCGAGAAATTTTGCAAACTTCATCAATTGTAAGGATTGTCATAAATACAAGGACTATGAACTCCAGCTACAATGT...
Protein
Download Protein FASTA403 aa · LXL04_024672|LXL04_024672|OH1004|PROTEIN
MASEKAKELVSSNTVVVFRIVRNLANFYGFEGLICQIYCPFCVDVKKLLTELNASFKAIEIDREILQTSSIVRIVINTRTMNSSYNVSTSTLRVMTEQFLFGNRICELPELLTGGYSGGGLRRSSCMFFVRLRQLTLMAYLLQGYVAFGRFDDFNYFVAGSERYNFVQEFYNGDLQHCEITHDKRGRTAQVNIICGDCPNGRCKGGLACVCDVTLESDCRIIVELAIPCEKQGVRVFEGFTVGFHPRSWEIVFPDTGLTV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024672 |
|---|---|
| TK1151 ID | TkA02G415480 |
| OH-1004 ID | LXL04_024672 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 83.300 |
| Protein coverage (%) | TK1151 98.663 / OH-1004 94.541Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024672 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:96484197-96487866 (+) | ||||||||||||
| Description | Similar to ELF5: Protein EARLY FLOWERING 5 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006396 RNA processing Biological Process GO:0009908 flower development Biological Process GO:0034599 cellular response to oxidative stress Biological Process GO:2000028 regulation of photoperiodism, flowering Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT5G40370 dosa:Os02g0618100 rcu:8289824 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.