LXL04_024551 | RubberDandelionOmics

Gene overview

LXL04_024551

Reference: OH-1004 Chr: Chr05 Coordinates: 93621960-93622548 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

387 bp · LXL04_024551|LXL04_024551|OH1004|cDNA

ATGAGATTGAGCGCCGTTTTACCTCGCGACTCCTCTCCTCCTTCTCTATTTTCCATCGCTGGAGCCTGGAAGCAATCGCGAGACCGCCGTTTTCCATCGCCTGCATCGACCTCCGCTGGAAGCAATCGCGAAGCAGGAAGCAATCGCGACTCCTCTCCTCCTTCTTTGTTCTCTCCGGCTCCTGCATCTTCTAAGTTATTATGTTTCACTCATGATCTTCGTTCGCAGAGTTATTTTCCGTCAATGACGAAGATCGTTGG...

CDS

Download CDS FASTA

387 bp · LXL04_024551|LXL04_024551|OH1004|CDS

ATGAGATTGAGCGCCGTTTTACCTCGCGACTCCTCTCCTCCTTCTCTATTTTCCATCGCTGGAGCCTGGAAGCAATCGCGAGACCGCCGTTTTCCATCGCCTGCATCGACCTCCGCTGGAAGCAATCGCGAAGCAGGAAGCAATCGCGACTCCTCTCCTCCTTCTTTGTTCTCTCCGGCTCCTGCATCTTCTAAGTTATTATGTTTCACTCATGATCTTCGTTCGCAGAGTTATTTTCCGTCAATGACGAAGATCGTTGG...

Protein

Download Protein FASTA

128 aa · LXL04_024551|LXL04_024551|OH1004|PROTEIN

MRLSAVLPRDSSPPSLFSIAGAWKQSRDRRFPSPASTSAGSNREAGSNRDSSPPSLFSPAPASSKLLCFTHDLRSQSYFPSMTKIVGTLGPKSRSVEVISRCLMAGMSGNFLLLSRFVLPNMDLVFTV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024551`
TK1151 ID	TkA06G131850
OH-1004 ID	LXL04_024551
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 85.938 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024551

Location Chr05:93621960-93622548 (+)

Description Similar to Os12g0145700: Pyruvate kinase 2, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0145700`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release
`UniProt: B8BM17`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release
`Os11g0148500`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release
`UniProt: B8BJ39`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024551 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004743 pyruvate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0030955 potassium ion binding Molecular Function

KEGG gene cross-reference

dosa:Os11g0148500

dosa:Os12g0145700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.431

Rank 1 · LXL04_024551 · OH-1004

Cytoplasm0.373

Rank 2 · LXL04_024551 · OH-1004

Cell membrane0.167

Rank 3 · LXL04_024551 · OH-1004

Endoplasmic reticulum0.111

Rank 4 · LXL04_024551 · OH-1004

Mitochondrion0.073

Rank 5 · LXL04_024551 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q2QXR8`	Oryza sativa subsp. japonica	Pyruvate kinase 2, cytosolic	81.250%	Swiss-Prot	weak database homology
`B8BM17`	Oryza sativa subsp. indica	Pyruvate kinase 2, cytosolic	81.250%	Swiss-Prot	weak database homology
`Q2RAK2`	Oryza sativa subsp. japonica	Pyruvate kinase 1, cytosolic	78.125%	Swiss-Prot	weak database homology
`B8BJ39`	Oryza sativa subsp. indica	Pyruvate kinase 1, cytosolic	78.125%	Swiss-Prot	weak database homology

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