Gene Card
Gene overview
cDNA / CDS / Protein Sequences
681 bp · LXL04_023852|LXL04_023852|OH1004|cDNA
ATGAATCTACCCCTCACCGTATCTGATACGTCCAAACTAGCGAACCACGTTCCCGATCCACGTTCCCACACTGAAGGTTATGCTAAAAAAAGAGGGATTAATGTCCTTGCTGAACTTGATGTTCGTGGACATGCTGTATACTTGGGTGTTGGTTATCCTGAATTATGGACATCAAAGAATTGCACAGAGCCACTTGATGTCCGCAATGAATTCCCCTTCAAGTTAATAAATGGAGTTCTTTCAGATTTCAGCAAAATCTT...
681 bp · LXL04_023852|LXL04_023852|OH1004|CDS
ATGAATCTACCCCTCACCGTATCTGATACGTCCAAACTAGCGAACCACGTTCCCGATCCACGTTCCCACACTGAAGGTTATGCTAAAAAAAGAGGGATTAATGTCCTTGCTGAACTTGATGTTCGTGGACATGCTGTATACTTGGGTGTTGGTTATCCTGAATTATGGACATCAAAGAATTGCACAGAGCCACTTGATGTCCGCAATGAATTCCCCTTCAAGTTAATAAATGGAGTTCTTTCAGATTTCAGCAAAATCTT...
Protein
Download Protein FASTA226 aa · LXL04_023852|LXL04_023852|OH1004|PROTEIN
MNLPLTVSDTSKLANHVPDPRSHTEGYAKKRGINVLAELDVRGHAVYLGVGYPELWTSKNCTEPLDVRNEFPFKLINGVLSDFSKIFKYKFVHLGGDEVDTSCWSATPRIKKWLEQKGFNEETFNNFDSKLDRKTVFHNWNQDTWYLDHLDATKQQFYTNEQTIWPRAAAVVERLWTNVGRVAKDPKDMGLRLMHFRCLLNQRVAAAPLDGPGLVASIEPESCYIQ
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023852 |
|---|---|
| TK1151 ID | TkA02G465980 |
| OH-1004 ID | LXL04_023852 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 95.000 |
| Protein coverage (%) | TK1151 78.977 / OH-1004 61.504Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023852 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:71184488-71187192 (-) | |||||||||
| Description | Similar to HEXO3: Beta-hexosaminidase 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0006044 N-acetylglucosamine metabolic process Biological Process GO:0006491 N-glycan processing Biological Process GO:0006689 ganglioside catabolic process Biological Process GO:0007338 single fertilization Biological Process GO:0008360 regulation of cell shape Biological Process GO:0030203 glycosaminoglycan metabolic process Biological Process GO:0030207 chondroitin sulfate proteoglycan catabolic process Biological Process GO:0030209 dermatan sulfate proteoglycan catabolic process Biological Process GO:0030214 hyaluronan catabolic process Biological Process GO:0042742 defense response to bacterium Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G65590 ath:AT3G55260 ddi:DDB_G0282539 ddi:DDB_G0287033 hsa:3074 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00728.29Glyco_hydro_2027-125 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023852 | PF00728.29 | Glyco_hydro_20 | 27 | 125 | 8.6e-22 | 78.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.