LXL04_023324 | RubberDandelionOmics

Gene overview

LXL04_023324

Reference: OH-1004 Chr: Chr05 Coordinates: 32852517-32854653 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1077 bp · LXL04_023324|LXL04_023324|OH1004|cDNA

ATGAGGGAGGAAAAGTTGAAAGGAAAAGGAACTCATATAGAAAAGTTAGGGGAAAGATCAggaagaatttgtcaaaactGGAAAAAAGCTGAATCAATCAACTTAGAAACCATGTCTCTCCATGACAATGTTTGGGAAAAGAAGGCAAGAAGAATGGTCTGTGTATGGCCAGGTATAAGGCAACTATGCCTTAGGAAACACCTTATGTATGGCTTTATGCAGTTGTTTTCATTTCCATTCAAAACCTTGAGAGGAGTCAG...

CDS

Download CDS FASTA

1077 bp · LXL04_023324|LXL04_023324|OH1004|CDS

ATGAGGGAGGAAAAGTTGAAAGGAAAAGGAACTCATATAGAAAAGTTAGGGGAAAGATCAGGAAGAATTTGTCAAAACTGGAAAAAAGCTGAATCAATCAACTTAGAAACCATGTCTCTCCATGACAATGTTTGGGAAAAGAAGGCAAGAAGAATGGTCTGTGTATGGCCAGGTATAAGGCAACTATGCCTTAGGAAACACCTTATGTATGGCTTTATGCAGTTGTTTTCATTTCCATTCAAAACCTTGAGAGGAGTCAG...

Protein

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358 aa · LXL04_023324|LXL04_023324|OH1004|PROTEIN

MREEKLKGKGTHIEKLGERSGRICQNWKKAESINLETMSLHDNVWEKKARRMVCVWPGIRQLCLRKHLMYGFMQLFSFPFKTLRGVSRSLGVSHLCSISNMSTSLQIELVPCLKDNYAYLLHDLDTGTVGVVDPSESLPIIDALSKNNRNLTYILNTHHHYDHTGGNMDLKARYGAKVIGSNVDRDRIPGIDISLNDGDTWMFAGHEVHVIATPGHTKGHISFYFPASGAIFTGDTLFSLSCGKLFEGTPEQMHASLEKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023324`
TK1151 ID	TkA06G368490
OH-1004 ID	LXL04_023324
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023324

Location Chr05:32852517-32854653 (+)

Description Similar to GLX2-4: Probable hydroxyacylglutathione hydrolase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06130`	Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid.	No verified direct reference in this release
`At2g31350`	Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid.	No verified direct reference in this release
`At2g43430`	Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_023324 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0017001 antibiotic catabolic process Biological Process

GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Biological Process

GO:0034059 response to anoxia Biological Process

GO:0043200 response to amino acid Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004416 hydroxyacylglutathione hydrolase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0008800 beta-lactamase activity Molecular Function

KEGG gene cross-reference

ath:AT1G06130

ath:AT2G31350

ath:AT2G43430

cya:CYA_1132

mmr:Mmar10_2381

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.603

Rank 1 · LXL04_023324 · OH-1004

Cytoplasm0.249

Rank 2 · LXL04_023324 · OH-1004

Nucleus0.114

Rank 3 · LXL04_023324 · OH-1004

Peroxisome0.098

Rank 4 · LXL04_023324 · OH-1004

Plastid0.080

Rank 5 · LXL04_023324 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00753.34Lactamase_B118-273 aa

PF16123.12HAGH_C274-358 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023324	`PF00753.34`	Lactamase_B	118	273	1.5e-22	81.3
LXL04_023324	`PF16123.12`	HAGH_C	274	358	7e-26	91.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LDW8`	Arabidopsis thaliana	Probable hydroxyacylglutathione hydrolase 2, chloroplastic	70.607%	Swiss-Prot	strong database homology
`Q9SID3`	Arabidopsis thaliana	Hydroxyacylglutathione hydrolase 2, mitochondrial	70.740%	Swiss-Prot	strong database homology
`O24495`	Arabidopsis thaliana	Hydroxyacylglutathione hydrolase 1, mitochondrial	67.974%	Swiss-Prot	strong database homology

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