Gene Card
Gene overview
cDNA / CDS / Protein Sequences
291 bp · LXL04_023107|LXL04_023107|OH1004|cDNA
atgttttttatttttaatttgaaTGGTTGGCAGGCGAGTGACAGGTTTAATATCAACTCCCAACTTGAGCATCTACAAGCCAAGTATGTAGGAACAGGACATGCAGACATGAACAGATTTGAATGGGCGGTTAATATCCAAAGAGACAGCTATGCGTCATATGTTGGTCATTATCCAATGCTTGCTTATTTTGCAATTGCTGAAAATGAATCAATTGGGAGAGAACGCTACAATTTTATGCAGaAAATGCTGTTGCCATG...
291 bp · LXL04_023107|LXL04_023107|OH1004|CDS
ATGTTTTTTATTTTTAATTTGAATGGTTGGCAGGCGAGTGACAGGTTTAATATCAACTCCCAACTTGAGCATCTACAAGCCAAGTATGTAGGAACAGGACATGCAGACATGAACAGATTTGAATGGGCGGTTAATATCCAAAGAGACAGCTATGCGTCATATGTTGGTCATTATCCAATGCTTGCTTATTTTGCAATTGCTGAAAATGAATCAATTGGGAGAGAACGCTACAATTTTATGCAGAAAATGCTGTTGCCATG...
Protein
Download Protein FASTA96 aa · LXL04_023107|LXL04_023107|OH1004|PROTEIN
MFFIFNLNGWQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYVGHYPMLAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_023107 |
|---|---|
| TK1151 ID | TkA06G401800 |
| OH-1004 ID | LXL04_023107 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 84.200 |
| Protein coverage (%) | TK1151 99.020 / OH-1004 89.583Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_023107 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:23448118-23448615 (+) | |||||||||
| Description | Similar to At3g23325: Uncharacterized protein At3g23325 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000387 spliceosomal snRNP assembly Biological Process GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006282 regulation of DNA repair Biological Process GO:0010468 regulation of gene expression Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:1903241 U2-type prespliceosome assembly Biological Process GO:0000124 SAGA complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005684 U2-type spliceosomal complex Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G23325 ath:AT4G14342 bta:574400 dme:Dmel_CG11985 hsa:83443 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07189.17SF3b1014-91 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_023107 | PF07189.17 | SF3b10 | 14 | 91 | 1.7e-37 | 128.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.