LXL04_022418 | RubberDandelionOmics

Gene overview

LXL04_022418

Reference: OH-1004 Chr: Chr04 Coordinates: 149860349-149863037 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1026 bp · LXL04_022418|LXL04_022418|OH1004|cDNA

ATGACTGAGTCCAATCAGAACCCACCTCTCCTCCATGACTACACACAACTTCTGCAACAGTCTCGCGATTCAGCTGAAGTAAAGAAACACGCTAACTTTGACCAGGAGATGCAAGAATGCGACCTCCCCCTCGTGGATCTTGGTGGATTATGGAGCGTGAATAAGGAAGAGAGGGTTTCTTGTGCTTCAGAAATATGTAAAGCGTCGTCTGAATGGGGTTTCTTTCAGATTGTCAACCATGGAATAAGCCTGGAGCTTCT...

CDS

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1026 bp · LXL04_022418|LXL04_022418|OH1004|CDS

ATGACTGAGTCCAATCAGAACCCACCTCTCCTCCATGACTACACACAACTTCTGCAACAGTCTCGCGATTCAGCTGAAGTAAAGAAACACGCTAACTTTGACCAGGAGATGCAAGAATGCGACCTCCCCCTCGTGGATCTTGGTGGATTATGGAGCGTGAATAAGGAAGAGAGGGTTTCTTGTGCTTCAGAAATATGTAAAGCGTCGTCTGAATGGGGTTTCTTTCAGATTGTCAACCATGGAATAAGCCTGGAGCTTCT...

Protein

Download Protein FASTA

341 aa · LXL04_022418|LXL04_022418|OH1004|PROTEIN

MTESNQNPPLLHDYTQLLQQSRDSAEVKKHANFDQEMQECDLPLVDLGGLWSVNKEERVSCASEICKASSEWGFFQIVNHGISLELLRRMRKLQVELFKAPFEQKVASGLLDNSYRWGNRTATCPKQLSWCEAFHVPLSKISDETCYGEFSSLREVMQEYAGAMQELARSIARVLVVNMGIERSMWEDNCNESTCFMRLNRYPSCPISPEVFGLVPHTDSDFLTILHQDEHVGGLQLMKDSKWVAVKPNPDALVVNIGDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022418`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022418

Location Chr04:149860349-149863037 (+)

Description Similar to GA2OX6: Gibberellin 2-beta-dioxygenase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21200`	Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs.	Overexpression of a novel class of gibberellin 2-oxidases decreases gibberellin levels and creates dwarf plants.2003 · DOI: 10.1105/tpc.005975
`At1g50960`	Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs.	Overexpression of a novel class of gibberellin 2-oxidases decreases gibberellin levels and creates dwarf plants.2003 · DOI: 10.1105/tpc.005975

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0522500`	Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level.	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.).2010 · DOI: 10.1016/s1673-8527(09)60022-9
`Os07g0103500`	Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins (GAs), leading to the homeostatic regulation of their endogenous level.	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress.2014 · DOI: 10.1371/journal.pone.0087110

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022418 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0009685 gibberellin metabolic process Biological Process

GO:0009686 gibberellin biosynthetic process Biological Process

GO:0010336 gibberellic acid homeostasis Biological Process

GO:0045487 gibberellin catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0045543 gibberellin 2-beta-dioxygenase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0051213 dioxygenase activity Molecular Function

KEGG gene cross-reference

ath:AT1G50960

ath:AT4G21200

dosa:Os04g0522500

dosa:Os07g0103500

osa:4336431

osa:4342182

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.738

Rank 1 · LXL04_022418 · OH-1004

Nucleus0.424

Rank 2 · LXL04_022418 · OH-1004

Endoplasmic reticulum0.046

Rank 3 · LXL04_022418 · OH-1004

Mitochondrion0.044

Rank 4 · LXL04_022418 · OH-1004

Peroxisome0.043

Rank 5 · LXL04_022418 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N42-139 aa

PF03171.272OG-FeII_Oxy195-293 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022418	`PF14226.13`	DIOX_N	42	139	3e-17	64.1
LXL04_022418	`PF03171.27`	2OG-FeII_Oxy	195	293	5.7e-32	110.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49561`	Arabidopsis thaliana	Gibberellin 2-beta-dioxygenase 8	49.693%	Swiss-Prot	moderate database homology
`Q9C6I4`	Arabidopsis thaliana	Gibberellin 2-beta-dioxygenase 7	41.071%	Swiss-Prot	moderate database homology
`Q7XP65`	Oryza sativa subsp. japonica	Gibberellin 2-beta-dioxygenase 6	53.623%	Swiss-Prot	strong database homology
`Q8LGZ9`	Oryza sativa subsp. japonica	Gibberellin 2-beta-dioxygenase 5	46.132%	Swiss-Prot	moderate database homology

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