LXL04_022409 | RubberDandelionOmics

Gene overview

LXL04_022409

Reference: OH-1004 Chr: Chr04 Coordinates: 149642835-149644932 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_022409|LXL04_022409|OH1004|cDNA

TGCTTTTTGAGCACAAAGTCGCATTTTTTAAACGCAAAGTTTACGGAATCTGCCAACAGTTGCGTTAATTTCGTTTTCTCCCGTTGCCaacactctctttctctctcttcgatCTCTGTTTGCATGGCGGCAGTCCCAGTGAAGATGGTGGAGAAGCCAAACAAGAAGCAGGTGCTTCTCTTCCACTGCGTCGAATCCGAAGAACTTGCTCGCAAAATCGCCGCTCAATCCGACCACATTCAGCTCCAATCCATCAACTG...

CDS

Download CDS FASTA

1101 bp · LXL04_022409|LXL04_022409|OH1004|CDS

TTGAGCACAAAGTCGCATTTTTTAAACGCAAAGTTTACGGAATCTGCCAACAGTTGCGTTAATTTCGTTTTCTCCCGTTGCCAACACTCTCTTTCTCTCTCTTCGATCTCTGTTTGCATGGCGGCAGTCCCAGTGAAGATGGTGGAGAAGCCAAACAAGAAGCAGGTGCTTCTCTTCCACTGCGTCGAATCCGAAGAACTTGCTCGCAAAATCGCCGCTCAATCCGACCACATTCAGCTCCAATCCATCAACTGGAGGAG...

Protein

Download Protein FASTA

366 aa · LXL04_022409|LXL04_022409|OH1004|PROTEIN

MSTKSHFLNAKFTESANSCVNFVFSRCQHSLSLSSISVCMAAVPVKMVEKPNKKQVLLFHCVESEELARKIAAQSDHIQLQSINWRSFDDGFPNLFINNAQDIRGQHVSFLASFSSPSVIFEQLSVIFALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRGGPTSLVIYDIHALQERFYFGDNVLPYFETGIPLLKQRLHQLPDADKIVIAFPDDGAWKRFHKLLDHFPMVVCAKVREGDKRIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022409`
TK1151 ID	TkA05G465220
OH-1004 ID	LXL04_022409
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 99.457 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022409

Location Chr04:149642835-149644932 (-)

Description Similar to PRS4: Ribose-phosphate pyrophosphokinase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42910`	Ribose-phosphate pyrophosphokinase 4.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0714600`	Ribose-phosphate pyrophosphokinase 4.	No verified direct reference in this release
`Os01g0723600`	Ribose-phosphate pyrophosphokinase 3, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022409 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process Biological Process

GO:0006164 purine nucleotide biosynthetic process Biological Process

GO:0002189 ribose phosphate diphosphokinase complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004749 ribose phosphate diphosphokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT2G42910

dosa:Os01g0723600

dosa:Os02g0714600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.623

Rank 1 · LXL04_022409 · OH-1004

Mitochondrion0.187

Rank 2 · LXL04_022409 · OH-1004

Cytoplasm0.172

Rank 3 · LXL04_022409 · OH-1004

Nucleus0.090

Rank 4 · LXL04_022409 · OH-1004

Peroxisome0.064

Rank 5 · LXL04_022409 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13793.13Pribosyltran_N57-171 aa

PF00156.34Pribosyltran262-307 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022409	`PF13793.13`	Pribosyltran_N	57	171	5.1e-09	36.7
LXL04_022409	`PF00156.34`	Pribosyltran	262	307	1.5e-08	34.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q680A5`	Arabidopsis thaliana	Ribose-phosphate pyrophosphokinase 4	82.500%	Swiss-Prot	strong database homology
`Q6ZFT5`	Oryza sativa subsp. japonica	Ribose-phosphate pyrophosphokinase 4	84.076%	Swiss-Prot	strong database homology
`Q8S2E5`	Oryza sativa subsp. japonica	Ribose-phosphate pyrophosphokinase 3, chloroplastic	72.615%	Swiss-Prot	strong database homology

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