LXL04_022404 | RubberDandelionOmics

Gene overview

LXL04_022404

Reference: OH-1004 Chr: Chr04 Coordinates: 149587574-149599731 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1552 bp · LXL04_022404|LXL04_022404|OH1004|cDNA

GAAACTTGCTACCTATACATTTATGGTCAAAACCTCTCTCTATATATAGTCATACTATTATTACAATCTGTCAATCAATCATTTCAAAACACACTCTCACACACACAGTATGAACTTTCTAAGGACTTACAGTTTCCTCCTCATATTTTCTGTATCTATTTTCCGGTGGGGAGTGGCTGTTTCCGACCAGCAGAAGCCAACCGGCCGAGCATTTTTCAAGCAAGAAGCTGACCGAGTTACCCGTCTTCCCGGGCAGCCGC...

CDS

Download CDS FASTA

1485 bp · LXL04_022404|LXL04_022404|OH1004|CDS

CTGTCAATCAATCATTTCAAAACACACTCTCACACACACAGTATGAACTTTCTAAGGACTTACAGTTTCCTCCTCATATTTTCTGTATCTATTTTCCGGTGGGGAGTGGCTGTTTCCGACCAGCAGAAGCCAACCGGCCGAGCATTTTTCAAGCAAGAAGCTGACCGAGTTACCCGTCTTCCCGGGCAGCCGCCCGTGAGCTTCAAGCAGTATGCTGGATATGTTACGGTCAATGAAAGCCATGGAAGAGCACTGTTTTA...

Protein

Download Protein FASTA

494 aa · LXL04_022404|LXL04_022404|OH1004|PROTEIN

MSINHFKTHSHTHSMNFLRTYSFLLIFSVSIFRWGVAVSDQQKPTGRAFFKQEADRVTRLPGQPPVSFKQYAGYVTVNESHGRALFYWFFEAAESPDKKPLLLWLNGGPGCSSIGFGGLEELGPFVVKKSKSGLLLNDYAWNKAANLLFLESPVGVGFSYTNTSADIKELGDKITAQDSYTFLTKWFRRFPQYKSHDFYIAGESYAGHYAPQLAELIFDTNKVIPDHDRINFKGFMIGNALLDDATDQSGMIRYAWDHAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022404`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022404

Location Chr04:149587574-149599731 (+)

Description Similar to SCPL34: Serine carboxypeptidase-like 34

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23210`	Probable carboxypeptidase.	No verified direct reference in this release
`At5g08260`	Probable carboxypeptidase.	No verified direct reference in this release
`At4g30610`	Active serine carboxypeptidase with broad substrate preference, including basic and hydrophilic groups.	BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana.2001 · DOI: 10.1073/pnas.091065998 Arabidopsis BRS1 is a secreted and active serine carboxypeptidase.2005 · DOI: 10.1074/jbc.m503299200
`At2g24010`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0158500`	Acts as a positive regulator of grain size by controlling grain width, filling and weight.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022404 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G24010

ath:AT4G30610

ath:AT5G08260

ath:AT5G23210

dosa:Os05g0158500

osa:4337873

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.446

Rank 1 · LXL04_022404 · OH-1004

Extracellular0.283

Rank 2 · LXL04_022404 · OH-1004

Cytoplasm0.092

Rank 3 · LXL04_022404 · OH-1004

Endoplasmic reticulum0.083

Rank 4 · LXL04_022404 · OH-1004

Cell membrane0.081

Rank 5 · LXL04_022404 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S1061-486 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022404	`PF00450.29`	Peptidase_S10	61	486	1.7e-143	479.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WPR4`	Arabidopsis thaliana	Serine carboxypeptidase-like 34	66.594%	Swiss-Prot	strong database homology
`Q9LEY1`	Arabidopsis thaliana	Serine carboxypeptidase-like 35	52.183%	Swiss-Prot	strong database homology
`Q9M099`	Arabidopsis thaliana	Serine carboxypeptidase 24	50.753%	Swiss-Prot	strong database homology
`O82229`	Arabidopsis thaliana	Putative serine carboxypeptidase-like 23	50.113%	Swiss-Prot	strong database homology
`Q5W727`	Oryza sativa subsp. japonica	Serine carboxypeptidase-like 26	51.893%	Swiss-Prot	strong database homology

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