LXL04_022346 | RubberDandelionOmics

Gene overview

LXL04_022346

Reference: OH-1004 Chr: Chr04 Coordinates: 148834159-148836850 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1006 bp · LXL04_022346|LXL04_022346|OH1004|cDNA

GAATAGGTTAATGTATCCCGCCTCATCCCCAAACTCTCGCAGTCACAACTCACAACTCACGAGACTCACGAGTATCGGCCATCGCCGACTAGTCGACTACCGTTCTTCACCGCACCGATCCCGCCTACGCCGGCCGGCCAGCGCCTCCGTCAATCGTCATTCACCTCCGGCTCCCGCCCAAGCATCCACCTCAGTCGATTTCGCCCTTCAGTTGCAAAACGATTCCCGATTTCCTGCCCAGGATTACTCATTCTTGTATA...

CDS

Download CDS FASTA

996 bp · LXL04_022346|LXL04_022346|OH1004|CDS

ATGTATCCCGCCTCATCCCCAAACTCTCGCAGTCACAACTCACAACTCACGAGACTCACGAGTATCGGCCATCGCCGACTAGTCGACTACCGTTCTTCACCGCACCGATCCCGCCTACGCCGGCCGGCCAGCGCCTCCGTCAATCGTCATTCACCTCCGGCTCCCGCCCAAGCATCCACCTCAGTCGATTTCGCCCTTCAGTTGCAAAACGATTCCCGATTTCCTGCCCAGGATTACTCATTCTTGTATATGGGAAGGTT...

Protein

Download Protein FASTA

331 aa · LXL04_022346|LXL04_022346|OH1004|PROTEIN

MYPASSPNSRSHNSQLTRLTSIGHRRLVDYRSSPHRSRLRRPASASVNRHSPPAPAQASTSVDFALQLQNDSRFPAQDYSFLYMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQAKMGFIEDCETSLLVLRGFDSDISSEFNEIKRSMANSGKRATIRFSELKRRRYWYPLMVGIGLLLLQQLSGINGVLFYSSDIFESTVNFIVNGNSIEQSCNIWTWGSSGCCYCSYNRLGGQKWSKSSFNVIFDSNGCKQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022346`
TK1151 ID	TkA05G461650
OH-1004 ID	LXL04_022346
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	55.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_022346

Location Chr04:148834159-148836850 (+)

Description Similar to At1g75220: Sugar transporter ERD6-like 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75220`	Sugar transporter.	No verified direct reference in this release
`At1g19450`	Sugar transporter.	No verified direct reference in this release
`At1g08930`	Sugar transporter.	No verified direct reference in this release
`At1g08920`	Sugar transporter.	Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides.2010 · DOI: 10.1074/jbc.m109.054288
`At3g05400`	Sugar transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022346 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:0015749 monosaccharide transmembrane transport Biological Process

GO:0042593 glucose homeostasis Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT1G08920

ath:AT1G08930

ath:AT1G19450

ath:AT1G75220

ath:AT3G05400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.248

Rank 1 · LXL04_022346 · OH-1004

Endoplasmic reticulum0.227

Rank 2 · LXL04_022346 · OH-1004

Cytoplasm0.223

Rank 3 · LXL04_022346 · OH-1004

Nucleus0.222

Rank 4 · LXL04_022346 · OH-1004

Mitochondrion0.108

Rank 5 · LXL04_022346 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr78-122 aa

PF00083.31Sugar_tr128-207 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022346	`PF00083.31`	Sugar_tr	78	122	7.6e-24	85.1
LXL04_022346	`PF00083.31`	Sugar_tr	128	207	7.6e-24	85.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FRL3`	Arabidopsis thaliana	Sugar transporter ERD6-like 6	58.427%	Swiss-Prot	weak database homology
`Q93YP9`	Arabidopsis thaliana	Sugar transporter ERD6-like 4	57.865%	Swiss-Prot	weak database homology
`O04036`	Arabidopsis thaliana	Sugar transporter ERD6	36.932%	Swiss-Prot	weak database homology
`Q94KE0`	Arabidopsis thaliana	Sugar transporter ESL1	33.898%	Swiss-Prot	weak database homology
`Q8VZT3`	Arabidopsis thaliana	Sugar transporter ERD6-like 12	36.158%	Swiss-Prot	weak database homology

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