LXL04_022301 | RubberDandelionOmics

Gene overview

LXL04_022301

Reference: OH-1004 Chr: Chr04 Coordinates: 147876218-147877142 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

762 bp · LXL04_022301|LXL04_022301|OH1004|cDNA

ATGGCCAAAATTTCCTTCATTTTGCTAGCTTCTATCTACTCCCTTTTCCTTCATGCCCAAGCTTTCACCCCTTCCAGATGGACGAAAGCCCATGCAACCTTTTATGGAAACGCCGATGCTTCCGGAACAATGGGTGGTGCTTGTGGATATGGTAATTTGTATTCCACCGGATACGGTACAAGAACCGCCGCATTGAGTACTGCTCTTTTCAACGACGGCGCTGCGTGCGGCCAGTGTTACAAGATCATATGCGATTACAA...

CDS

Download CDS FASTA

762 bp · LXL04_022301|LXL04_022301|OH1004|CDS

ATGGCCAAAATTTCCTTCATTTTGCTAGCTTCTATCTACTCCCTTTTCCTTCATGCCCAAGCTTTCACCCCTTCCAGATGGACGAAAGCCCATGCAACCTTTTATGGAAACGCCGATGCTTCCGGAACAATGGGTGGTGCTTGTGGATATGGTAATTTGTATTCCACCGGATACGGTACAAGAACCGCCGCATTGAGTACTGCTCTTTTCAACGACGGCGCTGCGTGCGGCCAGTGTTACAAGATCATATGCGATTACAA...

Protein

Download Protein FASTA

253 aa · LXL04_022301|LXL04_022301|OH1004|PROTEIN

MAKISFILLASIYSLFLHAQAFTPSRWTKAHATFYGNADASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGAACGQCYKIICDYKTDPKWCKKGVSVTITATNFCPPNYAQANDAGGWCNPPLQHFDMAQPAWEKIGIYRGGIIPVIYQRVPCKKHGGVRFTINGRNYFELVLVTNVGGAGAVRSMKVKGSKTGWMPMSRNWGANWQSNSYLNGQSLSFMVTTNDGVTKTFTNIVPAGWSFGQTFSSRLQF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022301`
TK1151 ID	TkA05G457660
OH-1004 ID	LXL04_022301
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022301

Location Chr04:147876218-147877142 (+)

Description Similar to EXPA1: Expansin-A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g20190`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0228400`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os06g0718100`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os02g0268000`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os02g0267200`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022301 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009826 unidimensional cell growth Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G20190

dosa:Os02g0267200

dosa:Os04g0228400

dosa:Os06g0718100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.824

Rank 1 · LXL04_022301 · OH-1004

Cytoplasm0.070

Rank 2 · LXL04_022301 · OH-1004

Lysosome / Vacuole0.045

Rank 3 · LXL04_022301 · OH-1004

Endoplasmic reticulum0.035

Rank 4 · LXL04_022301 · OH-1004

Cell membrane0.024

Rank 5 · LXL04_022301 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22514.3EXPB1_D131-158 aa

PF29515.1Expansin_N32-110 aa

PF03330.25DPBB_162-150 aa

PF01357.28Expansin_C161-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022301	`PF22514.3`	EXPB1_D1	31	158	1.8e-07	32.3
LXL04_022301	`PF29515.1`	Expansin_N	32	110	1.1e-09	39.3
LXL04_022301	`PF03330.25`	DPBB_1	62	150	7.3e-22	78.1
LXL04_022301	`PF01357.28`	Expansin_C	161	238	1.3e-29	102.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LNU3`	Arabidopsis thaliana	Expansin-A11	71.429%	Swiss-Prot	strong database homology
`Q7XWU8`	Oryza sativa subsp. japonica	Expansin-A1	71.371%	Swiss-Prot	strong database homology
`Q4PR39`	Oryza sativa subsp. japonica	Expansin-A29	65.882%	Swiss-Prot	strong database homology
`Q4PR43`	Oryza sativa subsp. japonica	Expansin-A23	74.026%	Swiss-Prot	strong database homology
`Q4PR52`	Oryza sativa subsp. japonica	Expansin-A13	73.820%	Swiss-Prot	strong database homology

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