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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_022290
Reference: OH-1004 Chr: Chr04 Coordinates: 147652242-147655977 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1086 bp · LXL04_022290|LXL04_022290|OH1004|cDNA

ATGATAACTGGGCTTTGTAAAAGGGGTAAACTTGAGGAAACAGAAGACTTACTTTCAAAGATGATTGATAGTGGCGTGTGTGACTATGAACAATGGGACAAAGCCAAGAGACTTTTAGATGACATGCTTGCTCAAAATATCCCGCGCAATATACAAACGTATACCATCTTAGTTGATGCACTGTGTAAAGAAGGGAAAGTAACAGAAGCACACCATCTCTTTGCATCCATGATTAAAGAAGGTGCACTACCTAATACCGT...

CDS

Download CDS FASTA

1086 bp · LXL04_022290|LXL04_022290|OH1004|CDS

ATGATAACTGGGCTTTGTAAAAGGGGTAAACTTGAGGAAACAGAAGACTTACTTTCAAAGATGATTGATAGTGGCGTGTGTGACTATGAACAATGGGACAAAGCCAAGAGACTTTTAGATGACATGCTTGCTCAAAATATCCCGCGCAATATACAAACGTATACCATCTTAGTTGATGCACTGTGTAAAGAAGGGAAAGTAACAGAAGCACACCATCTCTTTGCATCCATGATTAAAGAAGGTGCACTACCTAATACCGT...

Protein

Download Protein FASTA

361 aa · LXL04_022290|LXL04_022290|OH1004|PROTEIN

MITGLCKRGKLEETEDLLSKMIDSGVCDYEQWDKAKRLLDDMLAQNIPRNIQTYTILVDALCKEGKVTEAHHLFASMIKEGALPNTVTYNTLMDGYCLVERVDEAKNLLDYMTSHNCAPSVISYNTLINGYCKSKRLDEALSLFKGMSRNGIDPNVATYNTLISGLCHDGRFKDAMMLFDEMKTCGLEADIVTYSTLVDSLCKHKKVEEALEMFAKIDSVGLAPNIVTCNCLIDGLCKDGKLEGANKLFSELSVRGLKPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_022290
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_022290
LocationChr04:147652242-147655977 (+)
DescriptionSimilar to At1g12300: Pentatricopeptide repeat-containing protein At1g12300, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g12300 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial. No verified direct reference in this release
At1g12775 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At1g12700 Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial. No verified direct reference in this release
At1g62930 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022290 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0090615 mitochondrial mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G12300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.321
Rank 1 · LXL04_022290 · OH-1004
Cytoplasm0.259
Rank 2 · LXL04_022290 · OH-1004
Nucleus0.160
Rank 3 · LXL04_022290 · OH-1004
Plastid0.116
Rank 4 · LXL04_022290 · OH-1004
Cell membrane0.030
Rank 5 · LXL04_022290 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535.27PPR1-26 aa
PF13041.13PPR_225-63 aa
PF29070.1MSC6_N32-175 aa
PF17177.11PPR_long32-127 aa
PF13812.13PPR_337-94 aa
PF12854.14PPR_147-77 aa
PF01535.27PPR53-81 aa
PF13041.13PPR_257-97 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_022290PF01535.27PPR1263.5e-81262.7
LXL04_022290PF13041.13PPR_225632.4e-123402.9
LXL04_022290PF29070.1MSC6_N321753.9e-29102.6
LXL04_022290PF17177.11PPR_long321271.4e-2384.1
LXL04_022290PF13812.13PPR_337949.9e-47157.6
LXL04_022290PF12854.14PPR_147774.2e-103337.4
LXL04_022290PF01535.27PPR53813.5e-81262.7
LXL04_022290PF13041.13PPR_257972.4e-123402.9
LXL04_022290PF12854.14PPR_1811134.2e-103337.4
LXL04_022290PF13041.13PPR_2841242.4e-123402.9
LXL04_022290PF01535.27PPR871173.5e-81262.7
LXL04_022290PF23276.3TPR_241072162.3e-2383.3
LXL04_022290PF13812.13PPR_31081649.9e-47157.6
LXL04_022290PF12854.14PPR_11161474.2e-103337.4
LXL04_022290PF13041.13PPR_21191682.4e-123402.9
LXL04_022290PF01535.27PPR1221523.5e-81262.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WKV3Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12300, mitochondrial39.945%Swiss-Protmoderate database homology
Q9LPX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12775, mitochondrial39.394%Swiss-Protmoderate database homology
Q6NQ83Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22470, mitochondrial39.118%Swiss-Protmoderate database homology
P0C7Q7Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g12700, mitochondrial41.538%Swiss-Protmoderate database homology
Q9LQ14Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62930, chloroplastic38.587%Swiss-Protmoderate database homology

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