LXL04_022196 | RubberDandelionOmics

Gene overview

LXL04_022196

Reference: OH-1004 Chr: Chr04 Coordinates: 145966359-145970843 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1008 bp · LXL04_022196|LXL04_022196|OH1004|cDNA

ATGAGAAGAGCTTCTACGTTCGCCGCCGCTTCCACGTCCCTATCCCGCGCCATCCTTTCCGAACACCACCACGAATATAACAGGCTCTTTCAGGCAGCATCCTTTTACGCCACTAATGCCGGCTCTTCTCGCCGCTGGTTTTCTTCATCTCTGGGATCTAAACCTCCAGGCAGTTATTCTTCCAGTGCTGCTAAAGTTTTTCTGTCCTTAGGCTGTGTTGCGGCCACCGTCGCGGCTGGGGCGTCATCGGTGTTCGTGGA...

CDS

Download CDS FASTA

1008 bp · LXL04_022196|LXL04_022196|OH1004|CDS

ATGAGAAGAGCTTCTACGTTCGCCGCCGCTTCCACGTCCCTATCCCGCGCCATCCTTTCCGAACACCACCACGAATATAACAGGCTCTTTCAGGCAGCATCCTTTTACGCCACTAATGCCGGCTCTTCTCGCCGCTGGTTTTCTTCATCTCTGGGATCTAAACCTCCAGGCAGTTATTCTTCCAGTGCTGCTAAAGTTTTTCTGTCCTTAGGCTGTGTTGCGGCCACCGTCGCGGCTGGGGCGTCATCGGTGTTCGTGGA...

Protein

Download Protein FASTA

335 aa · LXL04_022196|LXL04_022196|OH1004|PROTEIN

MRRASTFAAASTSLSRAILSEHHHEYNRLFQAASFYATNAGSSRRWFSSSLGSKPPGSYSSSAAKVFLSLGCVAATVAAGASSVFVEEEAYAKEPVSPDLAPKEVVLYQYEACPFCNKVKAFLDYYDVPYKVVEVNPLSKKEIKWSDYKKVPILMVDGQQLQDSSAIIDQMKTKISPVRSSSLVNDDEEEKKWRKWVDDHLVHMLSPNIYRNTSEALESFDYITNNGNFSYTEKYTVKYAGAAAMYFVSKKLKKKYNITD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022196`
TK1151 ID	TkA05G450090
OH-1004 ID	LXL04_022196
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_022196`
Location	Chr04:145966359-145970843 (-)
Description	Similar to ptges2: Prostaglandin E synthase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_022196` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006629 lipid metabolic process Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0046457 prostanoid biosynthetic process Biological Process GO:0046903 secretion Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0035578 azurophil granule lumen Cellular Component GO:0048471 perinuclear region of cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference	bta:493639 dre:799964 hsa:80142 mmu:96979 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.946

Rank 1 · LXL04_022196 · OH-1004

Cytoplasm0.075

Rank 2 · LXL04_022196 · OH-1004

Nucleus0.060

Rank 3 · LXL04_022196 · OH-1004

Cell membrane0.033

Rank 4 · LXL04_022196 · OH-1004

Plastid0.020

Rank 5 · LXL04_022196 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00462.31Glutaredoxin105-159 aa

PF13417.13GST_N_3107-170 aa

PF13409.13GST_N_2112-169 aa

PF17172.11GST_N_4114-205 aa

PF13410.12GST_C_2261-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022196	`PF00462.31`	Glutaredoxin	105	159	3.6e-11	43.8
LXL04_022196	`PF13417.13`	GST_N_3	107	170	3.1e-14	53.8
LXL04_022196	`PF13409.13`	GST_N_2	112	169	4.1e-08	34.4
LXL04_022196	`PF17172.11`	GST_N_4	114	205	1.4e-09	39.2
LXL04_022196	`PF13410.12`	GST_C_2	261	322	4.9e-06	27.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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