Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3918 bp · LXL04_022168|LXL04_022168|OH1004|cDNA
ATGACTAACCTCGTTTGTGAACGAATAAAAACCCTAATTTCCACTCCATTTCATTTCTCCTTTCTCTCTCCACCTCCCACATTCTCTCTCCCAACGCAATTAATCTCTTCGACAGCTACAGCTTCTCCTATGGCGACGGCGGGCGAGGGAAGGGCTCCCTACGAAAGCAGTGGAGCCGGAGGAAAGCTCCGTAAGAGGCCTTTCCGGCGTAGTGCTCCGGCGACGCCGTATGATCGACCTGCTACCGCGCTCAGGAACAA...
3918 bp · LXL04_022168|LXL04_022168|OH1004|CDS
ATGACTAACCTCGTTTGTGAACGAATAAAAACCCTAATTTCCACTCCATTTCATTTCTCCTTTCTCTCTCCACCTCCCACATTCTCTCTCCCAACGCAATTAATCTCTTCGACAGCTACAGCTTCTCCTATGGCGACGGCGGGCGAGGGAAGGGCTCCCTACGAAAGCAGTGGAGCCGGAGGAAAGCTCCGTAAGAGGCCTTTCCGGCGTAGTGCTCCGGCGACGCCGTATGATCGACCTGCTACCGCGCTCAGGAACAA...
Protein
Download Protein FASTA1305 aa · LXL04_022168|LXL04_022168|OH1004|PROTEIN
MTNLVCERIKTLISTPFHFSFLSPPPTFSLPTQLISSTATASPMATAGEGRAPYESSGAGGKLRKRPFRRSAPATPYDRPATALRNNKPGLLTKLVDPASRLIYAGANKLFGVFRKRLPPLSLQGPPEINEEPQNVSQESGQNNSIGVSKRINQDGNSASISAATGISDLEQMLKQKTFTRSEIQHLTTLLHSRTTDSPSDNITETNGANPSPLLRVEASTSGSMKKHAALSTPFVSSKVFPSPDDVAKSYMGTITRPTT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022168 |
|---|---|
| TK1151 ID | TkA05G448720 |
| OH-1004 ID | LXL04_022168 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 97.700 |
| Protein coverage (%) | TK1151 99.895 / OH-1004 73.410Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022168 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr04:145588957-145599299 (-) | ||||||
| Description | Similar to NUP1: Nuclear pore complex protein NUP1 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006997 nucleus organization Biological Process GO:0015031 protein transport Biological Process GO:0016973 poly(A)+ mRNA export from nucleus Biological Process GO:0071763 nuclear membrane organization Biological Process GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005643 nuclear pore Cellular Component GO:0005829 cytosol Cellular Component GO:0034399 nuclear periphery Cellular Component | ||||||
| KEGG gene cross-reference | ath:AT3G10650 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9CAF4 | Arabidopsis thaliana | Nuclear pore complex protein NUP1 | 34.461% | Swiss-Prot | weak database homology |