LXL04_022147 | RubberDandelionOmics

Gene overview

LXL04_022147

Reference: OH-1004 Chr: Chr04 Coordinates: 145296374-145299509 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1311 bp · LXL04_022147|LXL04_022147|OH1004|cDNA

ATGGCGGGAGCCCTTCATGCCCTATTAAACCTCACTTCTCCGGTAGCCGGAGCCACCCCATTCCGATCCAGGAAATACACATTTACGAAGTCACATCTATTGTTTTCCGGCAATCTCTCTTTTGGTCTCACTAGAAGCAATTCGTTGCTTCCTCGAGAACTCCGGTCAGTTACTGGAACACTCGTAATCAGGAACAGCGCGAGTTCTGCTCAGGAGTTTCAGGGAAATGATGGTTCTAATCAACCTCATCAAGAGTCTGC...

CDS

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1311 bp · LXL04_022147|LXL04_022147|OH1004|CDS

ATGGCGGGAGCCCTTCATGCCCTATTAAACCTCACTTCTCCGGTAGCCGGAGCCACCCCATTCCGATCCAGGAAATACACATTTACGAAGTCACATCTATTGTTTTCCGGCAATCTCTCTTTTGGTCTCACTAGAAGCAATTCGTTGCTTCCTCGAGAACTCCGGTCAGTTACTGGAACACTCGTAATCAGGAACAGCGCGAGTTCTGCTCAGGAGTTTCAGGGAAATGATGGTTCTAATCAACCTCATCAAGAGTCTGC...

Protein

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436 aa · LXL04_022147|LXL04_022147|OH1004|PROTEIN

MAGALHALLNLTSPVAGATPFRSRKYTFTKSHLLFSGNLSFGLTRSNSLLPRELRSVTGTLVIRNSASSAQEFQGNDGSNQPHQESAPTFLASSAKPLLNFVGSNFLPLALISGVILGLINPSLGCLAHTYHVSKFSPFGIFLISGLTLRSEEIGAAVEAWPVGLFGLASILLFTPLFSRIVLQLHLQPQEFVTGLALFCCMPTTLSSGVALTRLAGGNSALALAMTVLSSLLGILIVPFSISKLIAGGVGATIPSGQLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022147`
TK1151 ID	TkA05G447620
OH-1004 ID	LXL04_022147
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.403 / OH-1004 61.468 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022147

Location Chr04:145296374-145299509 (+)

Description Similar to BASS4: Probable sodium/metabolite cotransporter BASS4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g56160`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0531200`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release
`UniProt: B8AJ09`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022147 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006814 sodium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0030210 heparin proteoglycan biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0015293 symporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G56160

dosa:Os02g0531200

hsa:84068

xla:100337583

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · LXL04_022147 · OH-1004

Peroxisome0.023

Rank 2 · LXL04_022147 · OH-1004

Cell membrane0.020

Rank 3 · LXL04_022147 · OH-1004

Nucleus0.017

Rank 4 · LXL04_022147 · OH-1004

Golgi apparatus0.017

Rank 5 · LXL04_022147 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13593.12SBF_like107-423 aa

PF01758.22SBF145-306 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022147	`PF13593.12`	SBF_like	107	423	2.7e-46	159.0
LXL04_022147	`PF01758.22`	SBF	145	306	1.7e-14	54.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IZC4`	Arabidopsis thaliana	Probable sodium/metabolite cotransporter BASS4, chloroplastic	67.544%	Swiss-Prot	strong database homology
`Q6ESG1`	Oryza sativa subsp. japonica	Probable sodium/metabolite cotransporter BASS4, chloroplastic	60.000%	Swiss-Prot	strong database homology
`B8AJ09`	Oryza sativa subsp. indica	Probable sodium/metabolite cotransporter BASS4, chloroplastic	60.000%	Swiss-Prot	strong database homology

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