Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4467 bp · LXL04_022059|LXL04_022059|OH1004|cDNA
ATGCCTCCCAAACCTGAAAACATGGGTGATGAACTCCTCACCACTGAAGATCAATTACAAGGCCTCCTCCGCCTAACCACTGCCACCAACACTAAACTCGATACACTCTCCACTAACATGGCAAACCTGGTCACAATCCTTACCAATCAAAGATTgaatcaaccaccaccaccaccaccaccaccaccacctccaccaccaccaccacctccaccaccaccaccaccaccgccacctcATCCCCCCAACCTCCGACCTCC...
4467 bp · LXL04_022059|LXL04_022059|OH1004|CDS
ATGCCTCCCAAACCTGAAAACATGGGTGATGAACTCCTCACCACTGAAGATCAATTACAAGGCCTCCTCCGCCTAACCACTGCCACCAACACTAAACTCGATACACTCTCCACTAACATGGCAAACCTGGTCACAATCCTTACCAATCAAAGATTGAATCAACCACCACCACCACCACCACCACCACCACCTCCACCACCACCACCACCTCCACCACCACCACCACCACCGCCACCTCATCCCCCCAACCTCCGACCTCC...
Protein
Download Protein FASTA1488 aa · LXL04_022059|LXL04_022059|OH1004|PROTEIN
MPPKPENMGDELLTTEDQLQGLLRLTTATNTKLDTLSTNMANLVTILTNQRLNQPPPPPPPPPPPPPPPPPPPPPPPPPHPPNLRPPKILLPNFDGSNPLDWLFHANNYFEYYAVAIDQRVALSVFYFNGDALSWYKYLASNQLLGTWPDFSRQLELRFGPSTFENHQATLFKLRQTTTVAAYQTEFERVSNCVTGLDNNALLNCFLSGLKTDIQSELAIHQPSSLHHAYGLAKLVEDKTNQQRSRFTYSRSHTFQASAT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022059 |
|---|---|
| TK1151 ID | TkA05G443170 |
| OH-1004 ID | LXL04_022059 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 92.400 |
| Protein coverage (%) | TK1151 92.671 / OH-1004 94.556Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022059 |
|---|---|
| Location | Chr04:144100009-144104570 (-) |
| Description | Similar to Tf2-6: Transposon Tf2-6 polyprotein (Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function |
| KEGG gene cross-reference | spo:2538755 spo:2541833 spo:2541991 spo:3361422 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03732.25PEG10_N-capsid89-159 aaPF19259.5Ty3_capsid119-250 aaPF30901.1PEG10-RTL1_C-capsid170-227 aaPF08284.17RVP_2366-462 aaPF30863.1PRO_PEG10-RTL1383-467 aaPF00078.33RVT_1578-745 aaPF17919.8RT_RNaseH_2807-900 aaPF17917.8RT_RNaseH833-929 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022059 | PF03732.25 | PEG10_N-capsid | 89 | 159 | 8.7e-08 | 33.1 |
| LXL04_022059 | PF19259.5 | Ty3_capsid | 119 | 250 | 1.8e-07 | 31.5 |
| LXL04_022059 | PF30901.1 | PEG10-RTL1_C-capsid | 170 | 227 | 1.1e-07 | 32.5 |
| LXL04_022059 | PF08284.17 | RVP_2 | 366 | 462 | 9.2e-10 | 39.2 |
| LXL04_022059 | PF30863.1 | PRO_PEG10-RTL1 | 383 | 467 | 2.1e-06 | 28.9 |
| LXL04_022059 | PF00078.33 | RVT_1 | 578 | 745 | 5.3e-25 | 89.2 |
| LXL04_022059 | PF17919.8 | RT_RNaseH_2 | 807 | 900 | 4.3e-23 | 82.0 |
| LXL04_022059 | PF17917.8 | RT_RNaseH | 833 | 929 | 3.3e-24 | 85.8 |
| LXL04_022059 | PF17921.8 | Integrase_H2C2 | 1017 | 1072 | 1.8e-17 | 63.9 |
| LXL04_022059 | PF00665.33 | rve | 1094 | 1185 | 6.5e-11 | 43.1 |
| LXL04_022059 | PF24626.2 | SH3_Tf2-1 | 1303 | 1366 | 1.8e-22 | 79.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.