Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1134 bp · LXL04_022027|LXL04_022027|OH1004|cDNA
ATGGTGAGCGAGACAAGATCAAGATTGACGGCTGCACAGGTACGCGATCTGGTAGCCGAGGAGGTGATGCGAGCGATCGGCGAAGCGATTCCGGGCATTGTCACCGGCATCCGGGACCAGTTAGCGGTCATGATGGAGGAACGTATCGCGGCGATTCCAGCTGCTGGGGGCTATCAGTCTCGACCGAGAGAGTTCCAGTACCGAGACTTTGCTGCCTGTTCTCCTCCGGAGTTCAGAGGGGAGACCGATCCGATTATCAG...
1134 bp · LXL04_022027|LXL04_022027|OH1004|CDS
ATGGTGAGCGAGACAAGATCAAGATTGACGGCTGCACAGGTACGCGATCTGGTAGCCGAGGAGGTGATGCGAGCGATCGGCGAAGCGATTCCGGGCATTGTCACCGGCATCCGGGACCAGTTAGCGGTCATGATGGAGGAACGTATCGCGGCGATTCCAGCTGCTGGGGGCTATCAGTCTCGACCGAGAGAGTTCCAGTACCGAGACTTTGCTGCCTGTTCTCCTCCGGAGTTCAGAGGGGAGACCGATCCGATTATCAG...
Protein
Download Protein FASTA377 aa · LXL04_022027|LXL04_022027|OH1004|PROTEIN
MVSETRSRLTAAQVRDLVAEEVMRAIGEAIPGIVTGIRDQLAVMMEERIAAIPAAGGYQSRPREFQYRDFAACSPPEFRGETDPIISMRWISDMEGAFYTCGYAANLLRGAARDWWGLITGSMTPVQKDALTWEELVTRFRGQYFYLFGMVADVADDVAADMATEVAIDMVHMDDMCESVTEMTKKFTEMALFCPQYAASEDMKMTRYADMLRTEIREFVNATQFTTLSAMVEAARRRELELETQARKRKAILAVTLISA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_022027 |
|---|---|
| TK1151 ID | TkA04G390680 |
| OH-1004 ID | LXL04_022027 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 55.200 |
| Protein coverage (%) | TK1151 52.308 / OH-1004 94.430Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_022027 |
|---|---|
| Location | Chr04:143064929-143069949 (+) |
| Description | Similar to gag-pol: Gag-Pol polyprotein (Human immunodeficiency virus type 1 group O (isolate MVP5180) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0039657 symbiont-mediated suppression of host gene expression Biological Process GO:0039702 viral budding via host ESCRT complex Biological Process GO:0044826 viral genome integration into host DNA Biological Process GO:0046718 symbiont entry into host cell Biological Process GO:0052151 symbiont-mediated activation of host apoptosis Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0075713 establishment of integrated proviral latency Biological Process GO:0075732 viral penetration into host nucleus Biological Process GO:2000767 positive regulation of cytoplasmic translation Biological Process |
| KEGG gene cross-reference | sce:YNL255C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03732.25PEG10_N-capsid75-145 aaPF00098.29zf-CCHC292-307 aaPF00098.29zf-CCHC311-328 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_022027 | PF03732.25 | PEG10_N-capsid | 75 | 145 | 1.8e-06 | 28.9 |
| LXL04_022027 | PF00098.29 | zf-CCHC | 292 | 307 | 3.9e-11 | 43.2 |
| LXL04_022027 | PF00098.29 | zf-CCHC | 311 | 328 | 3.9e-11 | 43.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.