LXL04_021530 | RubberDandelionOmics

Gene overview

LXL04_021530

Reference: OH-1004 Chr: Chr04 Coordinates: 131678854-131681012 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1839 bp · LXL04_021530|LXL04_021530|OH1004|cDNA

ATGACGACAGCCCTAAACCCCAACGATGAAGGTACAGCCAAGCGTTTCTGGATTAGGTCGAATAAAGAATCGGTTCTTTCTCTCTACACTCCTTTCGTAGTTTCGTTAGCCTCTGGTAATCTCGAGCTTGATACTTTCCGCCATTACATCGCTCAAGATGTTCATTTTCTTAAATGCTTTGCCCAAGCATATGAATTAGCTAAGGAGTGTGCAGACGATGATGATGCTAAAGCTTCTATCAGTGAGTTAAGACAGAGTGT...

CDS

Download CDS FASTA

1839 bp · LXL04_021530|LXL04_021530|OH1004|CDS

ATGACGACAGCCCTAAACCCCAACGATGAAGGTACAGCCAAGCGTTTCTGGATTAGGTCGAATAAAGAATCGGTTCTTTCTCTCTACACTCCTTTCGTAGTTTCGTTAGCCTCTGGTAATCTCGAGCTTGATACTTTCCGCCATTACATCGCTCAAGATGTTCATTTTCTTAAATGCTTTGCCCAAGCATATGAATTAGCTAAGGAGTGTGCAGACGATGATGATGCTAAAGCTTCTATCAGTGAGTTAAGACAGAGTGT...

Protein

Download Protein FASTA

612 aa · LXL04_021530|LXL04_021530|OH1004|PROTEIN

MTTALNPNDEGTAKRFWIRSNKESVLSLYTPFVVSLASGNLELDTFRHYIAQDVHFLKCFAQAYELAKECADDDDAKASISELRQSVLEELEMHGSFCQEWGFDVSKETIPNSATLKYTDFLFATASGKIDGINCSSNLTPHFEKAKIAAFTISAMVPCMKLYAFLGKELQFLVDVNNNRHPYKKWIDNYSSEAFQAAARQIEELLDKLSVDLTVEDLNVMQKLYNQAMKLEMEFFLSQPLNQPTVVPLLEWHNRNCKET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021530`
TK1151 ID	TkA05G402050
OH-1004 ID	LXL04_021530
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.800
Protein coverage (%)	TK1151 93.889 / OH-1004 27.614 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021530

Location Chr04:131678854-131681012 (+)

Description Similar to TH2: Bifunctional TH2 protein, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g32470`	May be involved in the salvage of thiamine breakdown products.	Arabidopsis TH2 Encodes the Orphan Enzyme Thiamin Monophosphate Phosphatase.2016 · DOI: 10.1105/tpc.16.00600

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021530 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006772 thiamine metabolic process Biological Process

GO:0009228 thiamine biosynthetic process Biological Process

GO:0009229 thiamine diphosphate biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004789 thiamine-phosphate diphosphorylase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008902 hydroxymethylpyrimidine kinase activity Molecular Function

GO:0008972 phosphomethylpyrimidine kinase activity Molecular Function

GO:0042131 thiamine phosphate phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G32470

cef:CE1591

cgb:cg1654

cgl:Cgl1463

hin:HI_0358

spo:2541373

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.516

Rank 1 · LXL04_021530 · OH-1004

Nucleus0.228

Rank 2 · LXL04_021530 · OH-1004

Mitochondrion0.133

Rank 3 · LXL04_021530 · OH-1004

Plastid0.101

Rank 4 · LXL04_021530 · OH-1004

Peroxisome0.100

Rank 5 · LXL04_021530 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03070.22TENA_THI-431-236 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021530	`PF03070.22`	TENA_THI-4	31	236	1.5e-22	81.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4KFT7`	Arabidopsis thaliana	Bifunctional TH2 protein, mitochondrial	52.174%	Swiss-Prot	strong database homology

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