LXL04_021063 | RubberDandelionOmics

Gene overview

LXL04_021063

Reference: OH-1004 Chr: Chr04 Coordinates: 120385227-120385892 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

567 bp · LXL04_021063|LXL04_021063|OH1004|cDNA

ATGACCACCATCACAAATCCCACCACCCTCTTCCACCGCCAAATCACCACTTCCCACCGCCGCCACCCACTTCCACCAATAAAAGCCACATTTTCTGGTGAAGAAACCCAACATCACCGCCGGAGATTCGTCCTAAGCACCTCTATTTCACTACTAGCATTAAGCAACCTTAATGTCCAGGTAGCATCAGCCGAGAATTGGGGCACAAGGTCGTTCATAAAAGAACGTTTTTTTGAGCCAGGGTTGTCACCGGAAGATGC...

CDS

Download CDS FASTA

567 bp · LXL04_021063|LXL04_021063|OH1004|CDS

ATGACCACCATCACAAATCCCACCACCCTCTTCCACCGCCAAATCACCACTTCCCACCGCCGCCACCCACTTCCACCAATAAAAGCCACATTTTCTGGTGAAGAAACCCAACATCACCGCCGGAGATTCGTCCTAAGCACCTCTATTTCACTACTAGCATTAAGCAACCTTAATGTCCAGGTAGCATCAGCCGAGAATTGGGGCACAAGGTCGTTCATAAAAGAACGTTTTTTTGAGCCAGGGTTGTCACCGGAAGATGC...

Protein

Download Protein FASTA

188 aa · LXL04_021063|LXL04_021063|OH1004|PROTEIN

MTTITNPTTLFHRQITTSHRRHPLPPIKATFSGEETQHHRRRFVLSTSISLLALSNLNVQVASAENWGTRSFIKERFFEPGLSPEDAVARIRQTREGLHSIRNMLETMSWRYVLFYIRLKAAYLSQDLKNAMSIVPEPRKSSYVKAANELVDNMSGLDQYIRSPKVYESYLYYEKTLKSIDNLVALLA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021063`
TK1151 ID	TkA05G349270
OH-1004 ID	LXL04_021063
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_021063

Location Chr04:120385227-120385892 (-)

Description Similar to PNSL2: Photosynthetic NDH subunit of lumenal location 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14150`	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain.	Three PsbQ-like proteins are required for the function of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis.2010 · DOI: 10.1093/pcp/pcq060
`At4g05180`	May participate in photosystem II assembly and stabilization.	The PsbQ protein is required in Arabidopsis for photosystem II assembly/stability and photoautotrophy under low light conditions.2006 · DOI: 10.1074/jbc.m603582200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0544800`	Oxygen-evolving enhancer protein 3, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021063 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009767 photosynthetic electron transport chain Biological Process

GO:0005829 cytosol Cellular Component

GO:0009344 nitrite reductase complex [NAD(P)H] Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009654 photosystem II oxygen evolving complex Cellular Component

GO:0019898 extrinsic component of membrane Cellular Component

GO:0031977 thylakoid lumen Cellular Component

KEGG gene cross-reference

ath:AT1G14150

ath:AT4G05180

dosa:Os07g0544800

zma:542279

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.985

Rank 1 · LXL04_021063 · OH-1004

Mitochondrion0.019

Rank 2 · LXL04_021063 · OH-1004

Nucleus0.013

Rank 3 · LXL04_021063 · OH-1004

Cytoplasm0.010

Rank 4 · LXL04_021063 · OH-1004

Cell membrane0.008

Rank 5 · LXL04_021063 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05757.17PsbQ39-188 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021063	`PF05757.17`	PsbQ	39	188	3.6e-30	106.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XI73`	Arabidopsis thaliana	Photosynthetic NDH subunit of lumenal location 2, chloroplastic	57.672%	Swiss-Prot	strong database homology
`Q41932`	Arabidopsis thaliana	Oxygen-evolving enhancer protein 3-2, chloroplastic	30.172%	Swiss-Prot	moderate database homology
`Q0D5P8`	Oryza sativa subsp. japonica	Oxygen-evolving enhancer protein 3, chloroplastic	28.814%	Swiss-Prot	weak database homology

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