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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_021063
Query referenceOH1004
LocationChr04:120385227-120385892 (-)
DescriptionSimilar to PNSL2: Photosynthetic NDH subunit of lumenal location 2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_021063 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g14150 NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain.
Three PsbQ-like proteins are required for the function of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis.2010 · DOI: 10.1093/pcp/pcq060
At4g05180 May participate in photosystem II assembly and stabilization.
The PsbQ protein is required in Arabidopsis for photosystem II assembly/stability and photoautotrophy under low light conditions.2006 · DOI: 10.1074/jbc.m603582200

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0544800 Oxygen-evolving enhancer protein 3, chloroplastic. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009767photosynthetic electron transport chainBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.172; coverage=61.702; evalue=1.52e-11; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009344nitrite reductase complex [NAD(P)H]Cellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009543chloroplast thylakoid lumenCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.172; coverage=61.702; evalue=1.52e-11; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009579thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.172; coverage=61.702; evalue=1.52e-11; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009654photosystem II oxygen evolving complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019898extrinsic component of membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031977thylakoid lumenCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.172; coverage=61.702; evalue=1.52e-11; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048046apoplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.172; coverage=61.702; evalue=1.52e-11; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005509calcium ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009055electron transfer activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G14150KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.672; coverage=100.532; evalue=1.22e-69UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G05180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.172; coverage=61.702; evalue=1.52e-11UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os07g0544800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.814; coverage=62.766; evalue=4.13e-09UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:542279KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.724; coverage=61.702; evalue=1.63e-09UniProtKB/Swiss-Prot DAT 2026 current_release