Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1017 bp · LXL04_019113|LXL04_019113|OH1004|cDNA
ATGAGTGTGGGAGTGGCGGAGGATGATTCACGGATCGAAATACATCTTCCTGCCGACATTCACTGGGAGATGCTCGATAAATCCAAGTTCTTCTTCCTCGGTGCGGCTTTGTTTTCTGGTGTTTCCGGCATGCTATACCAAGCTCTAGTATTGAAAACTCGACAACAAGTCCAGTTACAAAACACACCGTGCTTCAAGATGGCTGCTTCGGTTCTACGACATGAAGGGTTTAGAGGTTTATATAGAGGGTTTGGGACTTC...
1017 bp · LXL04_019113|LXL04_019113|OH1004|CDS
ATGAGTGTGGGAGTGGCGGAGGATGATTCACGGATCGAAATACATCTTCCTGCCGACATTCACTGGGAGATGCTCGATAAATCCAAGTTCTTCTTCCTCGGTGCGGCTTTGTTTTCTGGTGTTTCCGGCATGCTATACCAAGCTCTAGTATTGAAAACTCGACAACAAGTCCAGTTACAAAACACACCGTGCTTCAAGATGGCTGCTTCGGTTCTACGACATGAAGGGTTTAGAGGTTTATATAGAGGGTTTGGGACTTC...
Protein
Download Protein FASTA338 aa · LXL04_019113|LXL04_019113|OH1004|PROTEIN
MSVGVAEDDSRIEIHLPADIHWEMLDKSKFFFLGAALFSGVSGMLYQALVLKTRQQVQLQNTPCFKMAASVLRHEGFRGLYRGFGTSLMGTIPARALYMGALEITKSNLRYTTVKMGLSEVKAAAIANAAAGLSAAVVAQLVWTPIDVVSQRLMVQGGKGTNMRSLRSVMYNGGIDAFSKIIQKDGVRGLYKGFGISILTYAPSNAVWWGSYSMAHRWILGGVLSNNDGGGGIKLNSAAVVAGQGLSATIASGFSALVTM...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_019113 |
|---|---|
| TK1151 ID | TkA05G020100 |
| OH-1004 ID | LXL04_019113 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_019113 |
|---|---|
| Location | Chr04:24003634-24004650 (-) |
| Description | Similar to SLC25A44: Solute carrier family 25 member 44 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006865 amino acid transport Biological Process GO:0009083 branched-chain amino acid catabolic process Biological Process GO:0015803 branched-chain amino acid transport Biological Process GO:0055085 transmembrane transport Biological Process GO:0120161 regulation of cold-induced thermogenesis Biological Process GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0031966 mitochondrial membrane Cellular Component GO:0005381 iron ion transmembrane transporter activity Molecular Function GO:0015658 branched-chain amino acid transmembrane transporter activity Molecular Function |
| KEGG gene cross-reference | ddi:DDB_G0269394 ddi:DDB_G0280083 hsa:9673 mmu:229517 pon:100172017 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00153.33Mito_carr41-110 aaPF00153.33Mito_carr125-220 aaPF00153.33Mito_carr243-330 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_019113 | PF00153.33 | Mito_carr | 41 | 110 | 2.3e-52 | 175.4 |
| LXL04_019113 | PF00153.33 | Mito_carr | 125 | 220 | 2.3e-52 | 175.4 |
| LXL04_019113 | PF00153.33 | Mito_carr | 243 | 330 | 2.3e-52 | 175.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.