LXL04_018672 | RubberDandelionOmics

Gene overview

LXL04_018672

Reference: OH-1004 Chr: Chr04 Coordinates: 16515483-16516667 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1185 bp · LXL04_018672|LXL04_018672|OH1004|cDNA

ATGATGTCAGCAAGAACCGATATCGACAGGCTCAGCAATTTGCCGGAGGCCTTGCGGCTTCACATCCTCGGCTATCTTCACGCAAAACTGGCGGTTCAAACATCTGTATTGTCAAAAACGTGGGTTTCTTTGTGGACCGGGATCCCGGTTCTTAAAATAAACTATCTTGATTTTGGTGTCGATGAGGTAACTACGTTTGATAAGTTCGTGACCAATGTTCTATGTCGTCGTGATAGTTTGGCTAAATTGGACAGGTTAAA...

CDS

Download CDS FASTA

1185 bp · LXL04_018672|LXL04_018672|OH1004|CDS

ATGATGTCAGCAAGAACCGATATCGACAGGCTCAGCAATTTGCCGGAGGCCTTGCGGCTTCACATCCTCGGCTATCTTCACGCAAAACTGGCGGTTCAAACATCTGTATTGTCAAAAACGTGGGTTTCTTTGTGGACCGGGATCCCGGTTCTTAAAATAAACTATCTTGATTTTGGTGTCGATGAGGTAACTACGTTTGATAAGTTCGTGACCAATGTTCTATGTCGTCGTGATAGTTTGGCTAAATTGGACAGGTTAAA...

Protein

Download Protein FASTA

394 aa · LXL04_018672|LXL04_018672|OH1004|PROTEIN

MMSARTDIDRLSNLPEALRLHILGYLHAKLAVQTSVLSKTWVSLWTGIPVLKINYLDFGVDEVTTFDKFVTNVLCRRDSLAKLDRLKFVNGTKDKLNIGFKYAFLHGVKHLEAWIQKVHVDDSETTWPVYLCDTLRSLKLQCDDGQMRFRSLVSESILFKNLKVLYLTHALITEVDPFSGFPVLKSLTLIQCNFHNERESLKVHALQLTDLTILGFNFLTSQIHKCELTAPRLRFLKYVGPFFSIGHDQGLSVLETLDIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018672`
TK1151 ID	TkA08G077620
OH-1004 ID	LXL04_018672
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.400
Protein coverage (%)	TK1151 100.000 / OH-1004 99.746 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018672

Location Chr04:16515483-16516667 (+)

Description Similar to At3g58930: F-box/LRR-repeat protein At3g58930

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58930`	F-box/LRR-repeat protein At3g58930.	No verified direct reference in this release
`At1g16930`	F-box/FBD/LRR-repeat protein At1g16930.	No verified direct reference in this release
`At1g66310`	FBD-associated F-box protein At1g66310.	No verified direct reference in this release
`At1g66290`	Putative F-box/FBD/LRR-repeat protein At1g66290.	No verified direct reference in this release
`At3g26922`	F-box/LRR-repeat protein At3g26922.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018672 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G16930

ath:AT1G66290

ath:AT1G66310

ath:AT3G26922

ath:AT3G58930

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.836

Rank 1 · LXL04_018672 · OH-1004

Cytoplasm0.234

Rank 2 · LXL04_018672 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_018672 · OH-1004

Endoplasmic reticulum0.034

Rank 4 · LXL04_018672 · OH-1004

Mitochondrion0.018

Rank 5 · LXL04_018672 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GXW6`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g58930	32.159%	Swiss-Prot	moderate database homology
`Q9FZ52`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g16930	27.574%	Swiss-Prot	weak database homology
`Q9C8Y6`	Arabidopsis thaliana	FBD-associated F-box protein At1g66310	27.049%	Swiss-Prot	weak database homology
`Q9C8Y8`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At1g66290	24.855%	Swiss-Prot	weak database homology
`Q9LJF8`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g26922	29.644%	Swiss-Prot	weak database homology

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