Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1419 bp · LXL04_018642|LXL04_018642|OH1004|cDNA
ATGTCCACTAGTAACAAAAACCTACATACATATGTAGATCATCCTCGTTTCCAAATTCCCTGTCATTTGAGATCGTTTCAATCAATCTCAAGTCGCCTGAGATTTGTTCATATAAAAAACTTTCTGATTTCGATTTCCCAAGAGAAAAAGATGAACGATGTCGATGTCTCGAAACAGATACAACAGATGGTCGCATTCATTCGGCAAGAAGCCGAAGAGAAAGCTAACGAGATCTCTGTCTCATCTGAAGAGGAATTTAA...
1419 bp · LXL04_018642|LXL04_018642|OH1004|CDS
ATGTCCACTAGTAACAAAAACCTACATACATATGTAGATCATCCTCGTTTCCAAATTCCCTGTCATTTGAGATCGTTTCAATCAATCTCAAGTCGCCTGAGATTTGTTCATATAAAAAACTTTCTGATTTCGATTTCCCAAGAGAAAAAGATGAACGATGTCGATGTCTCGAAACAGATACAACAGATGGTCGCATTCATTCGGCAAGAAGCCGAAGAGAAAGCTAACGAGATCTCTGTCTCATCTGAAGAGGAATTTAA...
Protein
Download Protein FASTA472 aa · LXL04_018642|LXL04_018642|OH1004|PROTEIN
MSTSNKNLHTYVDHPRFQIPCHLRSFQSISSRLRFVHIKNFLISISQEKKMNDVDVSKQIQQMVAFIRQEAEEKANEISVSSEEEFNIEKMQIVDTEKKKIKQDYERKTKQVDVKKKIEYSMQLNASRIKVLQAQDDLVIGMKNAAAKELLNVSHNKKTYRNLMKSLIVQGLQRLNERAVLLRCREVDLSLVESTLEDAKKDYFSKAKVDVRIELDKKVYLPPPPSNSDPNRVVLASIDGKIVFENTLDARLDLAFRNKL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018642 |
|---|---|
| TK1151 ID | TkA08G075270 |
| OH-1004 ID | LXL04_018642 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 95.900 |
| Protein coverage (%) | TK1151 96.903 / OH-1004 45.127Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018642 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:16156390-16165729 (+) | |||||||||
| Description | Similar to VHA-E1: V-type proton ATPase subunit E1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0007030 Golgi organization Biological Process GO:0009409 response to cold Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0009832 plant-type cell wall biogenesis Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005773 vacuole Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0009705 plant-type vacuole membrane Cellular Component GO:0022626 cytosolic ribosome Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G64200 ath:AT4G11150 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01991.24vATP-synt_E66-264 aaPF01991.24vATP-synt_E278-470 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018642 | PF01991.24 | vATP-synt_E | 66 | 264 | 1.3e-113 | 377.9 |
| LXL04_018642 | PF01991.24 | vATP-synt_E | 278 | 470 | 1.3e-113 | 377.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.