LXL04_018580 | RubberDandelionOmics

Gene overview

LXL04_018580

Reference: OH-1004 Chr: Chr04 Coordinates: 15090328-15092151 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1824 bp · LXL04_018580|LXL04_018580|OH1004|cDNA

ATGGACCACCGCTCGAATCGAATTCCCCATCTCCGTGGTTCTCTGCATGTTCTTTTCACCCTTGTATTTCTCGTATTTTGCTTCCATGAAACGAGCTACACGGGTATTATCAACCGGGTCGGGTCGCGAAATACTCCAAGAAACTTGGGGATCAAAACCCCACCTGATTGCACCGGATTAAATCAACATGAAGGCTATGAAACTGCGTGTGAGTTCTTATTAGCTAACCCTCACTGTAAATCCGATGGTTTTTTCAATTA...

CDS

Download CDS FASTA

1824 bp · LXL04_018580|LXL04_018580|OH1004|CDS

ATGGACCACCGCTCGAATCGAATTCCCCATCTCCGTGGTTCTCTGCATGTTCTTTTCACCCTTGTATTTCTCGTATTTTGCTTCCATGAAACGAGCTACACGGGTATTATCAACCGGGTCGGGTCGCGAAATACTCCAAGAAACTTGGGGATCAAAACCCCACCTGATTGCACCGGATTAAATCAACATGAAGGCTATGAAACTGCGTGTGAGTTCTTATTAGCTAACCCTCACTGTAAATCCGATGGTTTTTTCAATTA...

Protein

Download Protein FASTA

607 aa · LXL04_018580|LXL04_018580|OH1004|PROTEIN

MDHRSNRIPHLRGSLHVLFTLVFLVFCFHETSYTGIINRVGSRNTPRNLGIKTPPDCTGLNQHEGYETACEFLLANPHCKSDGFFNYMEFFYCSCENHTFIRYIILVLWLAALFYLLGNTAADYFCCSIENLSNLLRLPPTLAGVTLLPLGNGAPDVFASIAAFVSTDNGDVGINSILGGAIFVTCIVVGIISICVADQVVLIDKKCFIRDASVFLFAVVSLAVILFVGEVSVGGAIAFVFIYIVYAAVVAVNEFLRQKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018580`
TK1151 ID	TkA08G069180
OH-1004 ID	LXL04_018580
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.200
Protein coverage (%)	TK1151 96.257 / OH-1004 29.654 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018580

Location Chr04:15090328-15092151 (+)

Description Similar to CCX4: Cation/calcium exchanger 4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54115`	Membrane-localized H(+)-dependent K(+) and Na(+) transporter.	AtCCX3 is an Arabidopsis endomembrane H+ -dependent K+ transporter.2008 · DOI: 10.1104/pp.108.118810
`At3g14070`	May act as an endomembrane-localized, H⁺-dependent K⁺ and Na⁺ transporter.	AtCCX3 is an Arabidopsis endomembrane H+ -dependent K+ transporter.2008 · DOI: 10.1104/pp.108.118810
`At5g17860`	Vacuolar membrane-localized H(+)-dependent K(+) and Na(+) transporter.	No verified direct reference in this release
`At5g17850`	Membrane-localized H(+)-dependent K(+) and Na(+) transporter.	No verified direct reference in this release
`At1g08960`	May act as a membrane-localized, H⁺-dependent K⁺ and Na⁺ transporter.	Characterization of an AtCCX5 gene from Arabidopsis thaliana that involves in high-affinity K⁺ uptake and Na⁺ transport in yeast.2011 · DOI: 10.1016/j.bbrc.2011.09.030

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018580 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006812 monoatomic cation transport Biological Process

GO:0006813 potassium ion transport Biological Process

GO:0006814 sodium ion transport Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0010150 leaf senescence Biological Process

GO:0030003 intracellular monoatomic cation homeostasis Biological Process

GO:0043157 response to cation stress Biological Process

GO:0071805 potassium ion transmembrane transport Biological Process

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G08960

ath:AT1G54115

ath:AT3G14070

ath:AT5G17850

ath:AT5G17860

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.441

Rank 1 · LXL04_018580 · OH-1004

Cell membrane0.309

Rank 2 · LXL04_018580 · OH-1004

Endoplasmic reticulum0.142

Rank 3 · LXL04_018580 · OH-1004

Cytoplasm0.103

Rank 4 · LXL04_018580 · OH-1004

Golgi apparatus0.085

Rank 5 · LXL04_018580 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01699.30Na_Ca_ex107-250 aa

PF01699.30Na_Ca_ex441-592 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018580	`PF01699.30`	Na_Ca_ex	107	250	5.2e-55	186.3
LXL04_018580	`PF01699.30`	Na_Ca_ex	441	592	5.2e-55	186.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SYG9`	Arabidopsis thaliana	Cation/calcium exchanger 4	57.664%	Swiss-Prot	strong database homology
`Q9LJI2`	Arabidopsis thaliana	Cation/calcium exchanger 3	59.058%	Swiss-Prot	strong database homology
`Q9FKP1`	Arabidopsis thaliana	Cation/calcium exchanger 1	39.187%	Swiss-Prot	moderate database homology
`Q9FKP2`	Arabidopsis thaliana	Cation/calcium exchanger 2	41.993%	Swiss-Prot	moderate database homology
`O04034`	Arabidopsis thaliana	Cation/calcium exchanger 5	31.141%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card