LXL04_018566 | RubberDandelionOmics

Gene overview

LXL04_018566

Reference: OH-1004 Chr: Chr04 Coordinates: 14784934-14790085 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2736 bp · LXL04_018566|LXL04_018566|OH1004|cDNA

ATGGAGTCTGATTCTCCGATGAGTAGCCGCTCCGATGGAAGATCCAATTACAGCCGTGTGTTTGATGATTCCAATGACGTATACGGAATTGGGGGCGCAATGCTCCCTATTTTCCTTAATGATCTACAACGCAATAATGATCAGGATTTAGTGGAAGTCACGTTGGAGTTGGAAGATGATTCGATTATCTTGTGTAGTGTCACTCCCACCGGTAACAATCCTCATACTCTTCCTGTTTCTTCACAATCGCCACCGGCCGC...

CDS

Download CDS FASTA

2736 bp · LXL04_018566|LXL04_018566|OH1004|CDS

ATGGAGTCTGATTCTCCGATGAGTAGCCGCTCCGATGGAAGATCCAATTACAGCCGTGTGTTTGATGATTCCAATGACGTATACGGAATTGGGGGCGCAATGCTCCCTATTTTCCTTAATGATCTACAACGCAATAATGATCAGGATTTAGTGGAAGTCACGTTGGAGTTGGAAGATGATTCGATTATCTTGTGTAGTGTCACTCCCACCGGTAACAATCCTCATACTCTTCCTGTTTCTTCACAATCGCCACCGGCCGC...

Protein

Download Protein FASTA

911 aa · LXL04_018566|LXL04_018566|OH1004|PROTEIN

MESDSPMSSRSDGRSNYSRVFDDSNDVYGIGGAMLPIFLNDLQRNNDQDLVEVTLELEDDSIILCSVTPTGNNPHTLPVSSQSPPAATSRLRRKFSWLTSSSSRASSSDASVDHAIASRDARKMKAKLIRTKSSAQRALGGLRFISKTTNASDVSELWKNVESRFSYLAKDDGLLAREDFAECIGMADSKEFALGVFDALARRRQQKLGKITKAELYEFWLQISDQSFDARLQIFFDMADSNEDGRITRNEIQELLVLSA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018566`
TK1151 ID	TkA08G068470
OH-1004 ID	LXL04_018566
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018566

Location Chr04:14784934-14790085 (+)

Description Similar to RBOHE: Respiratory burst oxidase homolog protein E

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19230`	Calcium-dependent NADPH oxidase that generates superoxide.	No verified direct reference in this release
`At1g64060`	Calcium-dependent NADPH oxidase that generates superoxide.	Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response.2002 · DOI: 10.1073/pnas.012452499 NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis.2003 · DOI: 10.1093/emboj/cdg277 Extracellular ATP induces the accumulation of superoxide via NADPH oxidases in Arabidopsis.2006 · DOI: 10.1104/pp.105.073072 Ethylene-induced stomatal closure in Arabidopsis occurs via AtrbohF-mediated hydrogen peroxide synthesis.2006 · DOI: 10.1111/j.1365-313x.2006.02842.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0360200`	Calcium-dependent NADPH oxidase that generates superoxide.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018566 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002679 respiratory burst involved in defense response Biological Process

GO:0006952 defense response Biological Process

GO:0007231 osmosensory signaling pathway Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0033500 carbohydrate homeostasis Biological Process

GO:0043069 negative regulation of programmed cell death Biological Process

GO:0050665 hydrogen peroxide biosynthetic process Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0072593 reactive oxygen species metabolic process Biological Process

KEGG gene cross-reference

ath:AT1G19230

ath:AT1G64060

dosa:Os01g0360200

sot:102579392

sot:102598898

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.707

Rank 1 · LXL04_018566 · OH-1004

Endoplasmic reticulum0.122

Rank 2 · LXL04_018566 · OH-1004

Cytoplasm0.113

Rank 3 · LXL04_018566 · OH-1004

Golgi apparatus0.066

Rank 4 · LXL04_018566 · OH-1004

Lysosome / Vacuole0.057

Rank 5 · LXL04_018566 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08414.17NADPH_Ox127-230 aa

PF01794.26Ferric_reduct399-544 aa

PF08022.19FAD_binding_8588-703 aa

PF08030.18NAD_binding_6709-893 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018566	`PF08414.17`	NADPH_Ox	127	230	2.2e-38	131.4
LXL04_018566	`PF01794.26`	Ferric_reduct	399	544	9.2e-11	42.6
LXL04_018566	`PF08022.19`	FAD_binding_8	588	703	6.3e-31	107.4
LXL04_018566	`PF08030.18`	NAD_binding_6	709	893	1e-51	175.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81211`	Arabidopsis thaliana	Respiratory burst oxidase homolog protein E	63.636%	Swiss-Prot	strong database homology
`O48538`	Arabidopsis thaliana	Respiratory burst oxidase homolog protein F	56.878%	Swiss-Prot	strong database homology
`Q5ZAJ0`	Oryza sativa subsp. japonica	Respiratory burst oxidase homolog protein B	51.291%	Swiss-Prot	strong database homology

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