LXL04_018107 | RubberDandelionOmics

Gene overview

LXL04_018107

Reference: OH-1004 Chr: Chr04 Coordinates: 6777954-6778268 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

315 bp · LXL04_018107|LXL04_018107|OH1004|cDNA

ATGGCGAGACCTGCGAGACAATTGGCAGCGTCGTCAATGACAACAACCACCGCTACGATAACCCTAGATAACCCAACTCCGGCGCAGACAACAACTCTAACATTGACGCTCAATCCAAGGAAGAAGAAGGTGACATGGAAAGAAGGTACCGTCGATAACGAGTTTCTCCAAAAGAAGAGCTCAAAAAAATGCTGCATCTTCCATAAACAAAAATCTTTCGACGAAGATTCAAGCGACGACGAGGATTGTCACGATCATGA...

CDS

Download CDS FASTA

315 bp · LXL04_018107|LXL04_018107|OH1004|CDS

ATGGCGAGACCTGCGAGACAATTGGCAGCGTCGTCAATGACAACAACCACCGCTACGATAACCCTAGATAACCCAACTCCGGCGCAGACAACAACTCTAACATTGACGCTCAATCCAAGGAAGAAGAAGGTGACATGGAAAGAAGGTACCGTCGATAACGAGTTTCTCCAAAAGAAGAGCTCAAAAAAATGCTGCATCTTCCATAAACAAAAATCTTTCGACGAAGATTCAAGCGACGACGAGGATTGTCACGATCATGA...

Protein

Download Protein FASTA

104 aa · LXL04_018107|LXL04_018107|OH1004|PROTEIN

MARPARQLAASSMTTTTATITLDNPTPAQTTTLTLTLNPRKKKVTWKEGTVDNEFLQKKSSKKCCIFHKQKSFDEDSSDDEDCHDHDHDHGCGESKKDDGASTS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018107`
TK1151 ID	TkA08G026480
OH-1004 ID	LXL04_018107
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018107

Location Chr04:6777954-6778268 (+)

Description Similar to INH3: Protein phosphatase 1 regulatory subunit INH3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g31305`	Inhibitor of protein-phosphatase 1 (PP1).	Identification and functional characterization of inhibitor-3, a regulatory subunit of protein phosphatase 1 in plants.2009 · DOI: 10.1104/pp.109.135335

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018107 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001818 negative regulation of cytokine production Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0050830 defense response to Gram-positive bacterium Biological Process

GO:0000164 protein phosphatase type 1 complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004864 protein phosphatase inhibitor activity Molecular Function

GO:0004865 protein serine/threonine phosphatase inhibitor activity Molecular Function

GO:0008157 protein phosphatase 1 binding Molecular Function

KEGG gene cross-reference

ath:AT2G31305

cal:CAALFM_C114350WA

dre:550290

lel:PVL30_003122

spo:2543302

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.544

Rank 1 · LXL04_018107 · OH-1004

Nucleus0.370

Rank 2 · LXL04_018107 · OH-1004

Cell membrane0.211

Rank 3 · LXL04_018107 · OH-1004

Mitochondrion0.065

Rank 4 · LXL04_018107 · OH-1004

Endoplasmic reticulum0.051

Rank 5 · LXL04_018107 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07491.17PPI_Ypi138-82 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018107	`PF07491.17`	PPI_Ypi1	38	82	7.3e-20	71.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S8F7`	Arabidopsis thaliana	Protein phosphatase 1 regulatory subunit INH3	58.140%	Swiss-Prot	strong database homology

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