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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_018086
Reference: OH-1004 Chr: Chr04 Coordinates: 6405549-6406871 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1323 bp · LXL04_018086|LXL04_018086|OH1004|cDNA

ATGCCGCATTTGGATGAAGAACTGTTTCCTTCAACCCCTGGTAAAATTAAGATAGAGCGTGCCCATCATCACACGATGAATAGGGCGGTTCACCGGTGTTTTACCTCCACCACCACGATTTTTCTTTGGGCTTTGCTTTTCGTAGCTCTAATGGCGTCGTATATGAGCATCCAAAGCTTCGTTGATTCCGGTACCAGATACCTCCACCACACCAACTCACGAGATCACGATGGCATTGGTGGAGTCTATTGGGAGAAACA...

CDS

Download CDS FASTA

1323 bp · LXL04_018086|LXL04_018086|OH1004|CDS

ATGCCGCATTTGGATGAAGAACTGTTTCCTTCAACCCCTGGTAAAATTAAGATAGAGCGTGCCCATCATCACACGATGAATAGGGCGGTTCACCGGTGTTTTACCTCCACCACCACGATTTTTCTTTGGGCTTTGCTTTTCGTAGCTCTAATGGCGTCGTATATGAGCATCCAAAGCTTCGTTGATTCCGGTACCAGATACCTCCACCACACCAACTCACGAGATCACGATGGCATTGGTGGAGTCTATTGGGAGAAACA...

Protein

Download Protein FASTA

440 aa · LXL04_018086|LXL04_018086|OH1004|PROTEIN

MPHLDEELFPSTPGKIKIERAHHHTMNRAVHRCFTSTTTIFLWALLFVALMASYMSIQSFVDSGTRYLHHTNSRDHDGIGGVYWEKQIRSSAQIRRSNGISVLVTGAAGFVGTHVSLALKKRGDGVVGVDNFNDYYDPSLKNARRGLLDSHNVFVVEGDINDRELLAKLFDVVAFTHVMHLAAQAGVRYAMENPHSYVHSNVAGLVTLLEQCKSSDPQPAVVWASSSSVYGLNDKSPFSESDRTDQPASLYAATKKAGEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018086
TK1151 IDTkA08G027900
OH-1004 IDLXL04_018086
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.500
Protein coverage (%)TK1151 100.000 / OH-1004 87.727
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018086
LocationChr04:6405549-6406871 (-)
DescriptionSimilar to GAE1: UDP-glucuronate 4-epimerase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g30440 UDP-D-glucuronate 4-epimerase involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components.
The biosynthesis of D-Galacturonate in plants. functional cloning and characterization of a membrane-anchored UDP-D-Glucuronate 4-epimerase from Arabidopsis.2004 · DOI: 10.1104/pp.104.043745
At1g02000 Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. No verified direct reference in this release
At2g45310 Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. No verified direct reference in this release
At4g00110 Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. No verified direct reference in this release
At3g23820 Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components.
Identification and characterization of a UDP-D-glucuronate 4-epimerase in Arabidopsis.2004 · DOI: 10.1016/j.febslet.2004.06.005

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018086 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0033481 galacturonate biosynthetic process Biological Process
GO:0050829 defense response to Gram-negative bacterium Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0000138 Golgi trans cisterna Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0016020 membrane Cellular Component
GO:0032580 Golgi cisterna membrane Cellular Component
GO:0016854 racemase and epimerase activity Molecular Function
GO:0050378 UDP-glucuronate 4-epimerase activity Molecular Function
KEGG gene cross-reference
ath:AT1G02000
ath:AT2G45310
ath:AT3G23820
ath:AT4G00110
ath:AT4G30440
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.719
Rank 1 · LXL04_018086 · OH-1004
Endoplasmic reticulum0.119
Rank 2 · LXL04_018086 · OH-1004
Cytoplasm0.075
Rank 3 · LXL04_018086 · OH-1004
Lysosome / Vacuole0.057
Rank 4 · LXL04_018086 · OH-1004
Extracellular0.049
Rank 5 · LXL04_018086 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01370.28Epimerase102-336 aa
PF04321.24RmlD_sub_bind102-284 aa
PF02719.22Polysacc_synt_2102-307 aa
PF16363.12GDP_Man_Dehyd103-422 aa
PF01073.263Beta_HSD103-328 aa
PF07993.19NAD_binding_4150-283 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_018086PF01370.28Epimerase1023361.1e-50173.0
LXL04_018086PF04321.24RmlD_sub_bind1022847.3e-1452.2
LXL04_018086PF02719.22Polysacc_synt_21023072e-0937.8
LXL04_018086PF16363.12GDP_Man_Dehyd1034227.7e-48164.4
LXL04_018086PF01073.263Beta_HSD1033288.6e-1348.7
LXL04_018086PF07993.19NAD_binding_41502838.8e-0625.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M0B6Arabidopsis thalianaUDP-glucuronate 4-epimerase 178.802%Swiss-Protstrong database homology
Q9LPC1Arabidopsis thalianaUDP-glucuronate 4-epimerase 267.206%Swiss-Protstrong database homology
O22141Arabidopsis thalianaUDP-glucuronate 4-epimerase 466.287%Swiss-Protstrong database homology
O81312Arabidopsis thalianaUDP-glucuronate 4-epimerase 367.517%Swiss-Protstrong database homology
Q9LIS3Arabidopsis thalianaUDP-glucuronate 4-epimerase 671.751%Swiss-Protstrong database homology

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