LXL04_017860 | RubberDandelionOmics

Gene overview

LXL04_017860

Reference: OH-1004 Chr: Chr04 Coordinates: 2410247-2412667 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1551 bp · LXL04_017860|LXL04_017860|OH1004|cDNA

ATGGGAGCTTGTTGTTCTTGTTTTTCGTTCTCGTTGTGTCGATGTTGTTGTTTCAAATCCAAGCACCCTCGTTCCTCCGATCTAGAGAACCGCGGTGGTGACGATGACAAGCTAAAGTGGCCGTGTTTTCGGGAGTACAAACTAGACGAGCTTAAAACTGCAACCGGTGGGTTTTCCATCGAGAATGTGGTGTCGGAGCACGGCGAGAAGGCCCCCAACGTCGTCTACAAAGGAAAACTCCCGGACAGCGACTCTCTCAT...

CDS

Download CDS FASTA

1551 bp · LXL04_017860|LXL04_017860|OH1004|CDS

ATGGGAGCTTGTTGTTCTTGTTTTTCGTTCTCGTTGTGTCGATGTTGTTGTTTCAAATCCAAGCACCCTCGTTCCTCCGATCTAGAGAACCGCGGTGGTGACGATGACAAGCTAAAGTGGCCGTGTTTTCGGGAGTACAAACTAGACGAGCTTAAAACTGCAACCGGTGGGTTTTCCATCGAGAATGTGGTGTCGGAGCACGGCGAGAAGGCCCCCAACGTCGTCTACAAAGGAAAACTCCCGGACAGCGACTCTCTCAT...

Protein

Download Protein FASTA

516 aa · LXL04_017860|LXL04_017860|OH1004|PROTEIN

MGACCSCFSFSLCRCCCFKSKHPRSSDLENRGGDDDKLKWPCFREYKLDELKTATGGFSIENVVSEHGEKAPNVVYKGKLPDSDSLIAVKRFNKSAWPDTRQFLDEAKAVGQLRSHRLANLLGCCYEGDERLLIAEFMPNETLSKHLFHWENQPLKWSMRLRVALYLAQALEYCSIKGRSLYHDLNAYRVLFDQDCNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYMKTGRINAESVIYSFGTILLDLLSGKHIPPSHAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017860`
TK1151 ID	TkA08G045100
OH-1004 ID	LXL04_017860
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 99.598 / OH-1004 97.093 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017860

Location Chr04:2410247-2412667 (+)

Description Similar to BSK5: Serine/threonine-protein kinase BSK5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59010`	Probable serine/threonine kinase that acts as a positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1.	A mutation in Arabidopsis BSK5 encoding a brassinosteroid-signaling kinase protein affects responses to salinity and abscisic acid.2012 · DOI: 10.1016/j.bbrc.2012.08.118
`At3g54030`	Probable serine/threonine kinase that acts as a positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1.	No verified direct reference in this release
`At1g63500`	Probable serine/threonine kinase that acts as a positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1.	No verified direct reference in this release
`At5g41260`	Probable serine/threonine kinase that acts as a positive regulator of brassinosteroid (BR) signaling downstream of the receptor kinase BRI1.	BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis.2013 · DOI: 10.1111/tpj.12175 A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.2014 · DOI: 10.1021/pr5003164

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0684200`	Probable serine/threonine kinase that acts as a positive regulator of brassinosteroid (BR) signaling downstream of BRI1.	OsBRI1 Activates BR Signaling by Preventing Binding between the TPR and Kinase Domains of OsBSK3 via Phosphorylation.2016 · DOI: 10.1104/pp.15.01668

Functional annotation source

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Functional annotation source: OH1004 · LXL04_017860 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:1900459 positive regulation of brassinosteroid mediated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G63500

ath:AT3G54030

ath:AT5G41260

ath:AT5G59010

dosa:Os04g0684200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.601

Rank 1 · LXL04_017860 · OH-1004

Cytoplasm0.251

Rank 2 · LXL04_017860 · OH-1004

Nucleus0.225

Rank 3 · LXL04_017860 · OH-1004

Endoplasmic reticulum0.051

Rank 4 · LXL04_017860 · OH-1004

Golgi apparatus0.036

Rank 5 · LXL04_017860 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr74-312 aa

PF00069.32Pkinase74-311 aa

PF25575.1TPR_BSK1_C357-474 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017860	`PF07714.24`	PK_Tyr_Ser-Thr	74	312	2.7e-25	89.9
LXL04_017860	`PF00069.32`	Pkinase	74	311	1.9e-21	77.4
LXL04_017860	`PF25575.1`	TPR_BSK1_C	357	474	6.3e-61	204.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIL1`	Arabidopsis thaliana	Serine/threonine-protein kinase BSK5	70.800%	Swiss-Prot	strong database homology
`Q9M324`	Arabidopsis thaliana	Serine/threonine-protein kinase BSK6	70.000%	Swiss-Prot	strong database homology
`F4I3M3`	Arabidopsis thaliana	Serine/threonine-protein kinase BSK7	67.203%	Swiss-Prot	strong database homology
`Q9FHD7`	Arabidopsis thaliana	Serine/threonine-protein kinase BSK8	66.333%	Swiss-Prot	strong database homology
`B9FDE0`	Oryza sativa subsp. japonica	Probable serine/threonine-protein kinase BSK3	67.951%	Swiss-Prot	strong database homology

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