LXL04_017520 | RubberDandelionOmics

Gene overview

LXL04_017520

Reference: OH-1004 Chr: Chr03 Coordinates: 152372348-152375880 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1553 bp · LXL04_017520|LXL04_017520|OH1004|cDNA

ATGAAGGGTGACACGCAGATGCAGGTGACTCACGTTTCTCGTCAACGGAGGATTCTTCGAAAGTATTATAGAACGATTGATCGCAAGATGGAAAAATGTTCTCCGGAAGATGACGATCCAGAGAAAAAGCAGGAGAAAAAGGAGGATGTTGCTGCAGATCCAGAATTCTTTAGCTGCATGCTTCAGCCGCATTCCACGAACTCCGATCCTATTTACATCGGAACCCGCCGTCTTCTACTATTTCGCAAGGCTCGATCCGG...

CDS

Download CDS FASTA

1533 bp · LXL04_017520|LXL04_017520|OH1004|CDS

ATGAAGGGTGACACGCAGATGCAGGTGACTCACGTTTCTCGTCAACGGAGGATTCTTCGAAAGTATTATAGAACGATTGATCGCAAGATGGAAAAATGTTCTCCGGAAGATGACGATCCAGAGAAAAAGCAGGAGAAAAAGGAGGATGTTGCTGCAGATCCAGAATTCTTTAGCTGCATGCTTCAGCCGCATTCCACGAACTCCGATCCTATTTACATCGGAACCCGCCGTCTTCTACTATTTCGCAAGGCTCGATCCGG...

Protein

Download Protein FASTA

510 aa · LXL04_017520|LXL04_017520|OH1004|PROTEIN

MKGDTQMQVTHVSRQRRILRKYYRTIDRKMEKCSPEDDDPEKKQEKKEDVAADPEFFSCMLQPHSTNSDPIYIGTRRLLLFRKARSGTLHRKDWRCNGKGYVAYRNFITTLENRMKLQSPSHLSSPGTSGRWAPSSGPASLTHDMDTWSLSKSESQTLSRTNSILSNISEKTDQSRRKTEPAYSFVGMHCIFDECKSMVTVIKFGHMSSDILAFGANDGTLTVCSVSEPPSVMKKLSGHSKDVTDFDFTMNNHYIASSSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017520`
TK1151 ID	TkA02G037110
OH-1004 ID	LXL04_017520
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 98.566 / OH-1004 94.314 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_017520`
Location	Chr03:152372348-152375880 (-)
Description	Similar to WDR13: WD repeat-containing protein 13
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_017520` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:1904691 negative regulation of type B pancreatic cell proliferation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0034451 centriolar satellite Cellular Component GO:0048188 Set1C/COMPASS complex Cellular Component GO:0042393 histone binding Molecular Function GO:1990841 promoter-specific chromatin binding Molecular Function
KEGG gene cross-reference	hsa:54554 hsa:64743 mmu:73447 pon:100171581 ptr:449584 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.547

Rank 1 · LXL04_017520 · OH-1004

Nucleus0.381

Rank 2 · LXL04_017520 · OH-1004

Cell membrane0.116

Rank 3 · LXL04_017520 · OH-1004

Lysosome / Vacuole0.053

Rank 4 · LXL04_017520 · OH-1004

Mitochondrion0.052

Rank 5 · LXL04_017520 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25173.2Beta-prop_WDR3_1st189-280 aa

PF24805.2EIF3I190-270 aa

PF23414.2Beta-prop_EML_2193-272 aa

PF23775.2Beta-prop_RIG_2nd193-300 aa

PF24782.3WD40_MABP1-WDR62_2nd193-348 aa

PF25175.2Beta-prop_WDR5195-502 aa

PF24817.2WD40_WDHD1_1st196-364 aa

PF25168.2Beta-prop_WDR36-Utp21_2nd198-314 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017520	`PF25173.2`	Beta-prop_WDR3_1st	189	280	1.2e-27	97.5
LXL04_017520	`PF24805.2`	EIF3I	190	270	1.1e-09	38.6
LXL04_017520	`PF23414.2`	Beta-prop_EML_2	193	272	2.7e-24	86.7
LXL04_017520	`PF23775.2`	Beta-prop_RIG_2nd	193	300	1.9e-09	38.1
LXL04_017520	`PF24782.3`	WD40_MABP1-WDR62_2nd	193	348	3e-07	30.4
LXL04_017520	`PF25175.2`	Beta-prop_WDR5	195	502	2.9e-30	106.3
LXL04_017520	`PF24817.2`	WD40_WDHD1_1st	196	364	1.4e-25	90.8
LXL04_017520	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	198	314	2e-16	60.9
LXL04_017520	`PF24814.2`	WD40_Prp19	199	345	4.5e-22	79.1
LXL04_017520	`PF24807.2`	WD40_CDC20-Fz	206	365	1e-25	91.4
LXL04_017520	`PF24796.2`	WDR55	206	269	2.8e-15	56.8
LXL04_017520	`PF25174.2`	Beta-prop_THOC3	209	432	5.5e-29	101.7
LXL04_017520	`PF23381.2`	Beta-prop_IFT122_1st	210	408	5.2e-29	102.2
LXL04_017520	`PF24105.2`	Beta-prop_CAF1B_HIR1	230	321	3.7e-12	46.6
LXL04_017520	`PF23869.2`	Beta-prop_WDR75_1st	231	278	7.4e-07	29.5
LXL04_017520	`PF00400.39`	WD40	233	268	7e-23	80.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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