Gene Card
Gene overview
cDNA / CDS / Protein Sequences
810 bp · LXL04_017466|LXL04_017466|OH1004|cDNA
ATGGCAGTACTCGCATTCAGAGACACAACTGAAGAGAACAAGATTCTTTGTACCATGAATGTGGCAGAGGATTTCCAAGAAACATTTGACAGGATTACACCGAAGGATAACAGCATCTTTCTTTTCCTATGGCATGTTGTCCACTTAATTCTTAGGGTATTATACCTTGCCCTAGAGATCTTTCAAACAGTCGAAAGCTACCTTATAACAAATCGAATAGTGAAAGCATATGGACATCTAAACTTACAAAGAGTAAATTA...
810 bp · LXL04_017466|LXL04_017466|OH1004|CDS
ATGGCAGTACTCGCATTCAGAGACACAACTGAAGAGAACAAGATTCTTTGTACCATGAATGTGGCAGAGGATTTCCAAGAAACATTTGACAGGATTACACCGAAGGATAACAGCATCTTTCTTTTCCTATGGCATGTTGTCCACTTAATTCTTAGGGTATTATACCTTGCCCTAGAGATCTTTCAAACAGTCGAAAGCTACCTTATAACAAATCGAATAGTGAAAGCATATGGACATCTAAACTTACAAAGAGTAAATTA...
Protein
Download Protein FASTA269 aa · LXL04_017466|LXL04_017466|OH1004|PROTEIN
MAVLAFRDTTEENKILCTMNVAEDFQETFDRITPKDNSIFLFLWHVVHLILRVLYLALEIFQTVESYLITNRIVKAYGHLNLQRVNYLGVVIDSDEARETAEVIQLLEWLSDIGIKKVCLYDKEGVLKKSKEVLMERFNSVKQSNDDSELDALLNIKQIAFEFVSSSDGKEAVAKAANVLFKKYYSDGDTEKPFFTESYLTDALKTLGAVELDPDLLLVYGPARCHLGFPAWRIRYTEIVHMGPLKYKKHGLILKAIHKF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017466 |
|---|---|
| TK1151 ID | TkA02G042370 |
| OH-1004 ID | LXL04_017466 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 99.605 / OH-1004 93.680Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017466 |
|---|---|
| Location | Chr03:149774249-149776947 (+) |
| Description | Similar to NUS1: Dehydrodolichyl diphosphate synthase complex subunit NUS1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006489 dolichyl diphosphate biosynthetic process Biological Process GO:0030154 cell differentiation Biological Process GO:0032367 intracellular cholesterol transport Biological Process GO:0032383 regulation of intracellular cholesterol transport Biological Process GO:0035269 protein O-linked glycosylation via mannose Biological Process GO:0042632 cholesterol homeostasis Biological Process GO:0043048 dolichyl monophosphate biosynthetic process Biological Process GO:0055092 sterol homeostasis Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:1904423 dehydrodolichyl diphosphate synthase complex Cellular Component GO:0004659 prenyltransferase activity Molecular Function |
| KEGG gene cross-reference | dre:436629 hsa:116150 mmu:52014 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.