LXL04_016934 | RubberDandelionOmics

Gene overview

LXL04_016934

Reference: OH-1004 Chr: Chr03 Coordinates: 137223792-137224877 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1086 bp · LXL04_016934|LXL04_016934|OH1004|cDNA

ATGAGAGCAATGAAAGAGTTTAGACAAGGAGAACTTGAAGAAGCAACCCAAAACTTCTCAAGGTCTCATCTCATAGGCAAAGGAAGCCATGGGTGTATCTATAAAGCCACTCTAAAAAATGGTCAAATAGTTGCTATAAAGACACCATCTTTAGGCCTTTGCAAGCTACAAGACACCTCCAAGATCGAAAACGAAGCTCGTATATTATCGTCTTTTGCACAGAATCGGTTCTTGGTCAACTTACTCGGGACGAGTCATGA...

CDS

Download CDS FASTA

1086 bp · LXL04_016934|LXL04_016934|OH1004|CDS

ATGAGAGCAATGAAAGAGTTTAGACAAGGAGAACTTGAAGAAGCAACCCAAAACTTCTCAAGGTCTCATCTCATAGGCAAAGGAAGCCATGGGTGTATCTATAAAGCCACTCTAAAAAATGGTCAAATAGTTGCTATAAAGACACCATCTTTAGGCCTTTGCAAGCTACAAGACACCTCCAAGATCGAAAACGAAGCTCGTATATTATCGTCTTTTGCACAGAATCGGTTCTTGGTCAACTTACTCGGGACGAGTCATGA...

Protein

Download Protein FASTA

361 aa · LXL04_016934|LXL04_016934|OH1004|PROTEIN

MRAMKEFRQGELEEATQNFSRSHLIGKGSHGCIYKATLKNGQIVAIKTPSLGLCKLQDTSKIENEARILSSFAQNRFLVNLLGTSHDSAGHRVLVMEHMPGGMLHDLLHITIGGSSPPPWCKRATMAVQIARAVQFLHESKPMIIHRDIKSENILFDAKLNARLADFGLSVCINSPSQLANSVSLPAGTIGYLDPCYTTPGKLSTKNDVFSFGVVLLEIISGTKAIDVSRAPASIVEWARGMFEKDQVMEICDKKVKMPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016934`
TK1151 ID	TkA02G091490
OH-1004 ID	LXL04_016934
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	64.500
Protein coverage (%)	TK1151 97.500 / OH-1004 82.825 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016934

Location Chr03:137223792-137224877 (+)

Description Similar to At5g23170: Serine/threonine-protein kinase-like protein At5g23170

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23170`	Serine/threonine-protein kinase-like protein At5g23170.	No verified direct reference in this release
`At1g28390`	Serine/threonine-protein kinase-like protein At1g28390.	No verified direct reference in this release
`At3g51990`	Serine/threonine-protein kinase-like protein At3g51990.	No verified direct reference in this release
`At3g59420`	Controls formative cell division in meristems, including root tips and lateral root initiation zones of the pericycle, in response to CLE40 signal.	No verified direct reference in this release
`At4g34500`	Probable receptor-like serine/threonine-protein kinase At4g34500.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016934 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009786 regulation of asymmetric cell division Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010311 lateral root formation Biological Process

GO:0032877 positive regulation of DNA endoreduplication Biological Process

GO:0048364 root development Biological Process

GO:0048829 root cap development Biological Process

GO:0090392 sepal giant cell differentiation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009986 cell surface Cellular Component

KEGG gene cross-reference

ath:AT1G28390

ath:AT3G51990

ath:AT3G59420

ath:AT4G34500

ath:AT5G23170

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.634

Rank 1 · LXL04_016934 · OH-1004

Cytoplasm0.278

Rank 2 · LXL04_016934 · OH-1004

Nucleus0.257

Rank 3 · LXL04_016934 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_016934 · OH-1004

Golgi apparatus0.025

Rank 5 · LXL04_016934 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase20-292 aa

PF07714.24PK_Tyr_Ser-Thr22-294 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016934	`PF00069.32`	Pkinase	20	292	1.6e-39	136.6
LXL04_016934	`PF07714.24`	PK_Tyr_Ser-Thr	22	294	3.2e-37	129.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMY3`	Arabidopsis thaliana	Serine/threonine-protein kinase-like protein At5g23170	45.963%	Swiss-Prot	moderate database homology
`Q9SGN7`	Arabidopsis thaliana	Serine/threonine-protein kinase-like protein At1g28390	41.284%	Swiss-Prot	moderate database homology
`Q9SV05`	Arabidopsis thaliana	Serine/threonine-protein kinase-like protein At3g51990	43.729%	Swiss-Prot	moderate database homology
`Q9LX29`	Arabidopsis thaliana	Serine/threonine-protein kinase-like protein ACR4	39.692%	Swiss-Prot	moderate database homology
`Q6NKZ9`	Arabidopsis thaliana	Probable receptor-like serine/threonine-protein kinase At4g34500	35.526%	Swiss-Prot	moderate database homology

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