LXL04_016933 | RubberDandelionOmics

Gene overview

LXL04_016933

Reference: OH-1004 Chr: Chr03 Coordinates: 137215949-137219187 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1470 bp · LXL04_016933|LXL04_016933|OH1004|cDNA

ATGTCATTGTTGCCattttttccgattttacccctCCCTCTTCACCTTCTTCATCACAAAAGAACTCCATTGACAACCCTAGCAGTGCCCCCACCTTCCGCCACCGAAACCCGTCACCACCATCAACTTCTCCTCCACCTTCCGCCACCGAAACCCATCACCACCATCGCTGCTCCACCTTGTACCCTCGCCATATTCGCCTTCTTCTACAACCCTAAGGGAAAAATCGGAAAAAAAAGGCAACGACGACATTTTTCAAG...

CDS

Download CDS FASTA

1470 bp · LXL04_016933|LXL04_016933|OH1004|CDS

ATGTCATTGTTGCCATTTTTTCCGATTTTACCCCTCCCTCTTCACCTTCTTCATCACAAAAGAACTCCATTGACAACCCTAGCAGTGCCCCCACCTTCCGCCACCGAAACCCGTCACCACCATCAACTTCTCCTCCACCTTCCGCCACCGAAACCCATCACCACCATCGCTGCTCCACCTTGTACCCTCGCCATATTCGCCTTCTTCTACAACCCTAAGGGAAAAATCGGAAAAAAAAGGCAACGACGACATTTTTCAAG...

Protein

Download Protein FASTA

489 aa · LXL04_016933|LXL04_016933|OH1004|PROTEIN

MSLLPFFPILPLPLHLLHHKRTPLTTLAVPPPSATETRHHHQLLLHLPPPKPITTIAAPPCTLAIFAFFYNPKGKIGKKRQRRHFSSNEKNLHFDSFLNLCFNVNLISFQDLHCIKNRISDLNMANSRGPSTTTPRNMMYNGSGRHSLLPPKCPFPTIPPSYSDYLSNPTIPPKGIPKYRDINSHHQRASSESLLIEEQPSWLDELLNEPETPVQRGHRRASSDSFTYLEAANAANSNVEYGVQKDEHKLRNLTNIPSWG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016933`
TK1151 ID	TkA02G091500
OH-1004 ID	LXL04_016933
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 83.333 / OH-1004 40.900 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016933

Location Chr03:137215949-137219187 (-)

Description Similar to At4g06598: Uncharacterized protein At4g06598

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g06598`	Uncharacterized protein At4g06598.	No verified direct reference in this release
`At2g42380`	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development.	A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026 AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen.2009 · DOI: 10.1007/s11103-009-9493-y
`At3g58120`	Transcriptional activator.	A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0211800`	Transcription regulator.	No verified direct reference in this release
`Os02g0247100`	Transcription regulator.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016933 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT2G42380

ath:AT3G58120

ath:AT4G06598

dosa:Os01g0211800

dosa:Os02g0247100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.910

Rank 1 · LXL04_016933 · OH-1004

Cytoplasm0.151

Rank 2 · LXL04_016933 · OH-1004

Cell membrane0.046

Rank 3 · LXL04_016933 · OH-1004

Endoplasmic reticulum0.032

Rank 4 · LXL04_016933 · OH-1004

Plastid0.017

Rank 5 · LXL04_016933 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W3M7`	Arabidopsis thaliana	Uncharacterized protein At4g06598	38.828%	Swiss-Prot	moderate database homology
`F4IN23`	Arabidopsis thaliana	Basic leucine zipper 34	33.333%	Swiss-Prot	moderate database homology
`Q9M2K4`	Arabidopsis thaliana	Basic leucine zipper 61	44.531%	Swiss-Prot	weak database homology
`Q5QNI5`	Oryza sativa subsp. japonica	Basic leucine zipper 2	31.950%	Swiss-Prot	weak database homology
`Q6K3R9`	Oryza sativa subsp. japonica	Basic leucine zipper 19	50.549%	Swiss-Prot	weak database homology

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