LXL04_016931 | RubberDandelionOmics

Gene overview

LXL04_016931

Reference: OH-1004 Chr: Chr03 Coordinates: 137180674-137185709 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1674 bp · LXL04_016931|LXL04_016931|OH1004|cDNA

ATGGAGGAACAACATGAACTTATTAGGGAAGGAAGATCTTTAGCTGAAACTCCAACATGGGCTGTTGCTACAACGATCACTTTCATGGTGTTTGCTTGCTTGTTGGTTCAAAGATCTATTTACAGATTTGGGAGATGGTTGAAGAAAACAAGGAGGAAGGCTTTGTTGGCTTCTTTAGAGAAGATCAAAGAAGAACTTATGCTTCTTGGACTCATATCTTTATTATTGGGGCAATGGGCGAGGGTGATTTCACAAATTTG...

CDS

Download CDS FASTA

1674 bp · LXL04_016931|LXL04_016931|OH1004|CDS

ATGGAGGAACAACATGAACTTATTAGGGAAGGAAGATCTTTAGCTGAAACTCCAACATGGGCTGTTGCTACAACGATCACTTTCATGGTGTTTGCTTGCTTGTTGGTTCAAAGATCTATTTACAGATTTGGGAGATGGTTGAAGAAAACAAGGAGGAAGGCTTTGTTGGCTTCTTTAGAGAAGATCAAAGAAGAACTTATGCTTCTTGGACTCATATCTTTATTATTGGGGCAATGGGCGAGGGTGATTTCACAAATTTG...

Protein

Download Protein FASTA

557 aa · LXL04_016931|LXL04_016931|OH1004|PROTEIN

MEEQHELIREGRSLAETPTWAVATTITFMVFACLLVQRSIYRFGRWLKKTRRKALLASLEKIKEELMLLGLISLLLGQWARVISQICVDSSLFSSKFFLCSKEDYEMGKFVIFSRITSFSNETDDMPPEGLNTHFHQCGEGREPFVSYEGLEQLHRFLFVLGITHVLYSCVSVGLAMTKIYSWRKWEYQASLLAAENLQVRKMKVMRRQVTFIKHHATHPWSKSRILIWMLCFLRQFKSPMRRSDYAALRLGFITTHKLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016931`
TK1151 ID	TkA02G091630
OH-1004 ID	LXL04_016931
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 63.196 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016931

Location Chr03:137180674-137185709 (-)

Description Similar to MLO4: MLO-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11000`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At5g53760`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At1g26700`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At4g02600`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At2g39200`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016931 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G11000

ath:AT1G26700

ath:AT2G39200

ath:AT4G02600

ath:AT5G53760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.774

Rank 1 · LXL04_016931 · OH-1004

Endoplasmic reticulum0.120

Rank 2 · LXL04_016931 · OH-1004

Cytoplasm0.119

Rank 3 · LXL04_016931 · OH-1004

Lysosome / Vacuole0.075

Rank 4 · LXL04_016931 · OH-1004

Nucleus0.058

Rank 5 · LXL04_016931 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03094.21Mlo11-467 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016931	`PF03094.21`	Mlo	11	467	5.4e-169	563.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23693`	Arabidopsis thaliana	MLO-like protein 4	66.114%	Swiss-Prot	strong database homology
`Q9FI00`	Arabidopsis thaliana	MLO-like protein 11	47.525%	Swiss-Prot	moderate database homology
`Q94KB1`	Arabidopsis thaliana	MLO-like protein 14	46.761%	Swiss-Prot	moderate database homology
`O49621`	Arabidopsis thaliana	MLO-like protein 1	41.152%	Swiss-Prot	moderate database homology
`O80961`	Arabidopsis thaliana	MLO-like protein 12	38.075%	Swiss-Prot	moderate database homology

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