Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1746 bp · LXL04_016369|LXL04_016369|OH1004|cDNA
ATGGCGGAAGGAGACACAGACTGGGAAATACATCTAAGAACATTATCTTCGAACGCCCGAGACTCCAGTTTCTCCAATGATCCCGCTTCAGATCCTTCTCTTCTTCGTTCCGTGAGGAAGCTCACCGAATTGTGTAAAAGTGAAAACTCTGAGAATCTGATAGCTAGGGTTTATCCTCAACTCAATAAGATCTTTCAGCGTTCTGTTTCATCTATTTCTCACTCTCGATCATCTTCTGGACTCGTGCTACTGGCGATTCT...
1746 bp · LXL04_016369|LXL04_016369|OH1004|CDS
ATGGCGGAAGGAGACACAGACTGGGAAATACATCTAAGAACATTATCTTCGAACGCCCGAGACTCCAGTTTCTCCAATGATCCCGCTTCAGATCCTTCTCTTCTTCGTTCCGTGAGGAAGCTCACCGAATTGTGTAAAAGTGAAAACTCTGAGAATCTGATAGCTAGGGTTTATCCTCAACTCAATAAGATCTTTCAGCGTTCTGTTTCATCTATTTCTCACTCTCGATCATCTTCTGGACTCGTGCTACTGGCGATTCT...
Protein
Download Protein FASTA581 aa · LXL04_016369|LXL04_016369|OH1004|PROTEIN
MAEGDTDWEIHLRTLSSNARDSSFSNDPASDPSLLRSVRKLTELCKSENSENLIARVYPQLNKIFQRSVSSISHSRSSSGLVLLAILQFFIDYGEFVLHDADPSLRTFFRSCLSREFADPIVAEATLDFLNINKKKISLASPTLLPQFYPLLLKMFAWNGDKLEKPFLKVFPGLIAPGSFLPLFISLVDLPVLIVALEKVEKSSGPLIGSSIASIQKSAAPEMLLALMDEAYTGSMIGDGGADSENEDNNSIISDPLFLE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016369 |
|---|---|
| TK1151 ID | TkA02G148980 |
| OH-1004 ID | LXL04_016369 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016369 |
|---|---|
| Location | Chr03:120591154-120594752 (+) |
| Description | Similar to AP5Z1: AP-5 complex subunit zeta-1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000045 autophagosome assembly Biological Process GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006886 intracellular protein transport Biological Process GO:0006914 autophagy Biological Process GO:0007030 Golgi organization Biological Process GO:0007040 lysosome organization Biological Process GO:0010467 gene expression Biological Process GO:0015031 protein transport Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0016197 endosomal transport Biological Process GO:0034499 late endosome to Golgi transport Biological Process GO:1905146 lysosomal protein catabolic process Biological Process |
| KEGG gene cross-reference | hsa:9907 mmu:231855 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14764.13SPG4830-154 aaPF25154.2TPR_AP5Z1_C282-525 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016369 | PF14764.13 | SPG48 | 30 | 154 | 1.5e-35 | 122.8 |
| LXL04_016369 | PF25154.2 | TPR_AP5Z1_C | 282 | 525 | 7.3e-25 | 88.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.