Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2051 bp · LXL04_015768|LXL04_015768|OH1004|cDNA
ATGCTTCATAGAAACATGGGATTGCTCACATTGTATGCTTCCTTCCCCGTTCGTTGTCAGCGGCAACTAAACCCCTCCTGCAACCAGCTTCTTAAACCCTACTGTTCAGTCAATCACAATCGGCCGCCATGAAAGCCCCCCTCGAAGAAACCGACGTAGGCATCTCTTGCTACATCTCCCCTCTCCCTGGTTTTCGTGGCATTCTCAAGCAAAGGTACTCTGATTTTACAGTCAATGAAGTAGATTTGGATGAAAATGTT...
1950 bp · LXL04_015768|LXL04_015768|OH1004|CDS
CTGTTCAGTCAATCACAATCGGCCGCCATGAAAGCCCCCCTCGAAGAAACCGACGTAGGCATCTCTTGCTACATCTCCCCTCTCCCTGGTTTTCGTGGCATTCTCAAGCAAAGGTACTCTGATTTTACAGTCAATGAAGTAGATTTGGATGAAAATGTTATTCATTTGACTTCCTTAGATGCACCAATGGAGGTAGCAGAGGAACATGAATCAAATACTACAGATCAACCGAATGGTAACCATTGTACCGAAATCGAATC...
Protein
Download Protein FASTA649 aa · LXL04_015768|LXL04_015768|OH1004|PROTEIN
MFSQSQSAAMKAPLEETDVGISCYISPLPGFRGILKQRYSDFTVNEVDLDENVIHLTSLDAPMEVAEEHESNTTDQPNGNHCTEIESFRALVGDSDANSLKEFIEKIKSNDEDGVTSIVLSPSSDKVHRTAVHNFFKEKLKFLVTDTVDGPDSSSKCIRVRLNSGGNNERGRGSNFKKRKGRDETPYDSRGSDHWPEHLGKFLRFHLCKENKDTQEALGVIGKMLGVQPRAFGFSGTKDKRAVTTQRITVFKQRASKVAS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015768 |
|---|---|
| TK1151 ID | TkA02G288080 |
| OH-1004 ID | LXL04_015768 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 96.000 |
| Protein coverage (%) | TK1151 91.283 / OH-1004 58.089Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015768 |
|---|---|
| Location | Chr03:83543260-83548282 (+) |
| Description | Similar to PUS7: Multisubstrate pseudouridine synthase 7 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000455 enzyme-directed rRNA pseudouridine synthesis Biological Process GO:0001522 pseudouridine synthesis Biological Process GO:0006397 mRNA processing Biological Process GO:0006400 tRNA modification Biological Process GO:0008380 RNA splicing Biological Process GO:0017148 negative regulation of translation Biological Process GO:0031119 tRNA pseudouridine synthesis Biological Process GO:0031120 snRNA pseudouridine synthesis Biological Process GO:1990481 mRNA pseudouridine synthesis Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component |
| KEGG gene cross-reference | bta:615644 hsa:54517 mmu:78697 sce:YOR243C spo:2540668 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23943.2PUS7L_N89-148 aaPF01142.24TruD197-634 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015768 | PF23943.2 | PUS7L_N | 89 | 148 | 4.5e-07 | 30.6 |
| LXL04_015768 | PF01142.24 | TruD | 197 | 634 | 2.3e-85 | 287.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.