LXL04_015763 | RubberDandelionOmics

Gene overview

LXL04_015763

Reference: OH-1004 Chr: Chr03 Coordinates: 83366145-83368279 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1803 bp · LXL04_015763|LXL04_015763|OH1004|cDNA

ATGGCAAATTACTCCGAACCATCATCGTCCTTAAGCTTTACTTCACCTTCTCATATCTCCAATGGCTCTAATGGCTACCACATATCTTCCTCTTCAATCCCTGAAACACGAACAAATCTCGAAATCATCAGCCTAAACAAACTCAGTACCAACTTAGAAAAGCTCTTGATCCAAACCGATTCCCATTCTGATTCCGATTCCGATTCCGGGTCAAGTTACAGTGATGCAGTGATTGTAGTAGAAGGCAATCATGTAGGCAT...

CDS

Download CDS FASTA

1803 bp · LXL04_015763|LXL04_015763|OH1004|CDS

ATGGCAAATTACTCCGAACCATCATCGTCCTTAAGCTTTACTTCACCTTCTCATATCTCCAATGGCTCTAATGGCTACCACATATCTTCCTCTTCAATCCCTGAAACACGAACAAATCTCGAAATCATCAGCCTAAACAAACTCAGTACCAACTTAGAAAAGCTCTTGATCCAAACCGATTCCCATTCTGATTCCGATTCCGATTCCGGGTCAAGTTACAGTGATGCAGTGATTGTAGTAGAAGGCAATCATGTAGGCAT...

Protein

Download Protein FASTA

600 aa · LXL04_015763|LXL04_015763|OH1004|PROTEIN

MANYSEPSSSLSFTSPSHISNGSNGYHISSSSIPETRTNLEIISLNKLSTNLEKLLIQTDSHSDSDSDSGSSYSDAVIVVEGNHVGIHRCILAARSKFFSNLFKESNDRVVEDGRLKYIMSEILPFGNVGYDAFLVFLSYLYTGKMKGSPPEVSTCVHGGCPHDACRPAIVFAVELMYASVIFQVPELVSLFQWLIKSFPYETQRRLLNFIEKAFVEDVIPILLVAFHCELTHILTQCIHRVARSDLDDISLEKNLPPEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015763`
TK1151 ID	TkA02G289000
OH-1004 ID	LXL04_015763
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.700
Protein coverage (%)	TK1151 100.000 / OH-1004 80.167 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015763

Location Chr03:83366145-83368279 (-)

Description Similar to NPR1: BTB/POZ domain and ankyrin repeat-containing protein NPR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45110`	Salicylic acid (SA)-binding substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of NPR1 in response to SA.	Negative regulation of defense responses in Arabidopsis by two NPR1 paralogs.2006 · DOI: 10.1111/j.1365-313x.2006.02903.x NPR3 and NPR4 are receptors for the immune signal salicylic acid in plants.2012 · DOI: 10.1038/nature11162
`At4g19660`	Salicylic acid (SA)-binding substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of NPR1 in the absence of SA.	An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance.2005 · DOI: 10.1111/j.1365-313x.2004.02296.x Negative regulation of defense responses in Arabidopsis by two NPR1 paralogs.2006 · DOI: 10.1111/j.1365-313x.2006.02903.x NPR3 and NPR4 are receptors for the immune signal salicylic acid in plants.2012 · DOI: 10.1038/nature11162 Structural basis of salicylic acid perception by Arabidopsis NPR proteins.2020 · DOI: 10.1038/s41586-020-2596-y

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0767900`	Salicylic acid (SA)-binding substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility.2007 · DOI: 10.1111/j.1467-7652.2007.00243.x
`Os03g0667100`	Salicylic acid (SA)-binding substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility.2007 · DOI: 10.1111/j.1467-7652.2007.00243.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015763 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway Biological Process

GO:0010112 regulation of systemic acquired resistance Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT4G19660

ath:AT5G45110

dosa:Os01g0767900

dosa:Os03g0667100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.492

Rank 1 · LXL04_015763 · OH-1004

Nucleus0.346

Rank 2 · LXL04_015763 · OH-1004

Cell membrane0.140

Rank 3 · LXL04_015763 · OH-1004

Mitochondrion0.081

Rank 4 · LXL04_015763 · OH-1004

Golgi apparatus0.077

Rank 5 · LXL04_015763 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00651.38BTB71-147 aa

PF11900.15DUF3420246-295 aa

PF12796.14Ank_2295-376 aa

PF13637.13Ank_4323-372 aa

PF13857.13Ank_5338-390 aa

PF12313.14NPR1_like_C394-585 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015763	`PF00651.38`	BTB	71	147	5.2e-11	43.4
LXL04_015763	`PF11900.15`	DUF3420	246	295	1.8e-07	31.9
LXL04_015763	`PF12796.14`	Ank_2	295	376	1.5e-09	39.0
LXL04_015763	`PF13637.13`	Ank_4	323	372	5.4e-07	30.5
LXL04_015763	`PF13857.13`	Ank_5	338	390	7.8e-07	30.1
LXL04_015763	`PF12313.14`	NPR1_like_C	394	585	5.4e-84	281.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L746`	Arabidopsis thaliana	Regulatory protein NPR3	56.204%	Swiss-Prot	strong database homology
`Q5ICL9`	Arabidopsis thaliana	Regulatory protein NPR4	53.628%	Swiss-Prot	strong database homology
`Q0JJ01`	Oryza sativa subsp. japonica	BTB/POZ domain and ankyrin repeat-containing protein NPR2	54.659%	Swiss-Prot	strong database homology
`Q75HA6`	Oryza sativa subsp. japonica	BTB/POZ domain and ankyrin repeat-containing protein NPR3	47.500%	Swiss-Prot	moderate database homology

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