LXL04_015601 | RubberDandelionOmics

Gene overview

LXL04_015601

Reference: OH-1004 Chr: Chr03 Coordinates: 77338378-77339998 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1116 bp · LXL04_015601|LXL04_015601|OH1004|cDNA

ATGTTTTATCGGCATGATCGACCAGATGGAGCCAATATTGCGATCTTCAACCACGATAAGACCCATTGCAAAATAAGAACAAAAGGGACAACGGAgaaaatgaatatgatatcAGGAAAGGCAAATGCCTGGTTATCAAAACTTCTCACTCGTTTTGTCAAAATGAGTCAAATGTTGCAAGAGGAAATGAGGAATCATGAGGTAAACTTCGCACAGGAAATGAGGAATCAGTCAAAGGTTCCATCCTCTTCTTCGTCTTC...

CDS

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1035 bp · LXL04_015601|LXL04_015601|OH1004|CDS

ATGTTTTATCGGCATGATCGACCAGATGGAGCCAATATTGCGATCTTCAACCACGATAAGACCCATTGCAAAATAAGAACAAAAGGGACAACGGAGAAAATGAATATGATATCAGGAAAGGCAAATGCCTGGTTATCAAAACTTCTCACTCGTTTTGTCAAAATGAGTCAAATGTTGCAAGAGGAAATGAGGAATCATGAGGTAAACTTCGCACAGGAAATGAGGAATCAGTCAAAGGTTCCATCCTCTTCTTCGTCTTC...

Protein

Download Protein FASTA

344 aa · LXL04_015601|LXL04_015601|OH1004|PROTEIN

MFYRHDRPDGANIAIFNHDKTHCKIRTKGTTEKMNMISGKANAWLSKLLTRFVKMSQMLQEEMRNHEVNFAQEMRNQSKVPSSSSSSTRGLREKLKTHPISSCQGKTNIERGRNRRGKSETEEAKSAGRTREGEGVAGGLVGAPCFNLTLVTLAMTGYCWSPIAGDRRTACARRRRILDHSGVVCTETRVLERVLSATVSCIFSGTDCISGKVDQEFVCEDWKGVIGSIAMLVPAFTTNLSLVWAILSFMTASAGVAIAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015601`
TK1151 ID	TkA03G519360
OH-1004 ID	LXL04_015601
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.300
Protein coverage (%)	TK1151 95.205 / OH-1004 40.407 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015601

Location Chr03:77338378-77339998 (+)

Description Similar to At5g25040: Probable folate-biopterin transporter 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g25040`	Could mediate folate transport.	No verified direct reference in this release
`At1g79710`	Could mediate folate transport.	No verified direct reference in this release
`At5g25050`	Could mediate folate transport.	No verified direct reference in this release
`At5g10820`	Could mediate folate transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015601 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0098838 folate transmembrane transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0008517 folic acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G79710

ath:AT5G10820

ath:AT5G25040

ath:AT5G25050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.269

Rank 1 · LXL04_015601 · OH-1004

Nucleus0.244

Rank 2 · LXL04_015601 · OH-1004

Mitochondrion0.213

Rank 3 · LXL04_015601 · OH-1004

Cell membrane0.177

Rank 4 · LXL04_015601 · OH-1004

Endoplasmic reticulum0.172

Rank 5 · LXL04_015601 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03092.23BT1224-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015601	`PF03092.23`	BT1	224	332	5.6e-18	65.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4KIL8`	Arabidopsis thaliana	Probable folate-biopterin transporter 5	53.782%	Swiss-Prot	weak database homology
`Q9SQN2`	Arabidopsis thaliana	Probable folate-biopterin transporter 3	59.633%	Swiss-Prot	weak database homology
`Q5FV41`	Arabidopsis thaliana	Probable folate-biopterin transporter 2	52.500%	Swiss-Prot	weak database homology
`Q9LEV7`	Arabidopsis thaliana	Probable folate-biopterin transporter 6	42.424%	Swiss-Prot	weak database homology

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