LXL04_015508 | RubberDandelionOmics

Gene overview

LXL04_015508

Reference: OH-1004 Chr: Chr03 Coordinates: 74171533-74173359 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

729 bp · LXL04_015508|LXL04_015508|OH1004|cDNA

ATGGAACTTGAGCTCAGTCTCTCACCTCCCAATCAAAGCAGACATCCAATTATGAGGAAAAGCTGCCATGGGGGCGGTAACTCTGTGACAAGATGTCCTCTGGTTTCATGGGATCAAGAGGAAGAAGGTGAACCCAACAAAAGTTTCTATAATGGCGATTACCAACAGGATTTGGAAGGTGATGGAGAAGGGCTAGTTGGATGGCCACCATTGCATTCATGGAGGAGAAGGTTGATTGAAGGTGTAGGGTACAATATAAG...

CDS

Download CDS FASTA

729 bp · LXL04_015508|LXL04_015508|OH1004|CDS

ATGGAACTTGAGCTCAGTCTCTCACCTCCCAATCAAAGCAGACATCCAATTATGAGGAAAAGCTGCCATGGGGGCGGTAACTCTGTGACAAGATGTCCTCTGGTTTCATGGGATCAAGAGGAAGAAGGTGAACCCAACAAAAGTTTCTATAATGGCGATTACCAACAGGATTTGGAAGGTGATGGAGAAGGGCTAGTTGGATGGCCACCATTGCATTCATGGAGGAGAAGGTTGATTGAAGGTGTAGGGTACAATATAAG...

Protein

Download Protein FASTA

242 aa · LXL04_015508|LXL04_015508|OH1004|PROTEIN

MELELSLSPPNQSRHPIMRKSCHGGGNSVTRCPLVSWDQEEEGEPNKSFYNGDYQQDLEGDGEGLVGWPPLHSWRRRLIEGVGYNIRDDEQEEEEEGDNINVMNNNYNESLFVKVKMDGVGIARKIDLNAFHSYQMLTTTLLHMFDKCNGFFSLSARHRHNEGCLSEMIANGWGAVCQPSLRLSGPLSEGHSMLKLIKMGQVTSSSTKTKMEIGILHDTFHGKYSLVQFTVYEWRGTNGHVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015508`
TK1151 ID	TkA02G324270
OH-1004 ID	LXL04_015508
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.000
Protein coverage (%)	TK1151 76.684 / OH-1004 60.744 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015508

Location Chr03:74171533-74173359 (+)

Description Similar to IAA11: Auxin-responsive protein IAA11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28640`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At3g16500`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0523300`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os02g0228900`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os03g0742900`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015508 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT3G16500

ath:AT4G28640

dosa:Os02g0228900

dosa:Os03g0742900

dosa:Os05g0523300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.777

Rank 1 · LXL04_015508 · OH-1004

Cytoplasm0.242

Rank 2 · LXL04_015508 · OH-1004

Cell membrane0.077

Rank 3 · LXL04_015508 · OH-1004

Endoplasmic reticulum0.062

Rank 4 · LXL04_015508 · OH-1004

Plastid0.020

Rank 5 · LXL04_015508 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309.23AUX_IAA56-149 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015508	`PF02309.23`	AUX_IAA	56	149	3.7e-19	70.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38829`	Arabidopsis thaliana	Auxin-responsive protein IAA11	38.824%	Swiss-Prot	weak database homology
`Q8LAL2`	Arabidopsis thaliana	Auxin-responsive protein IAA26	35.632%	Swiss-Prot	weak database homology
`Q5W670`	Oryza sativa subsp. japonica	Auxin-responsive protein IAA18	33.333%	Swiss-Prot	weak database homology
`Q6H543`	Oryza sativa subsp. japonica	Auxin-responsive protein IAA7	34.568%	Swiss-Prot	weak database homology
`Q10D34`	Oryza sativa subsp. japonica	Auxin-responsive protein IAA13	37.037%	Swiss-Prot	weak database homology

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