LXL04_015452 | RubberDandelionOmics

Gene overview

LXL04_015452

Reference: OH-1004 Chr: Chr03 Coordinates: 72495650-72498376 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2727 bp · LXL04_015452|LXL04_015452|OH1004|cDNA

ATGGCGATCTCACAGTCTTCTTTGCTAGTTTCAATATGGTTTGTCATATACCTATTAGTATTCCCCAAATTAGATCCGGTTTCTGCTCAAAGTTGCCCCCAATCCAACACTTCTCTACTTAATTTCACTACCCAGTTTGTTATGGCTCAGCATCAACTAAGAGGGTCTTTTAGCATAATCAATGATTGTTCTTTTAGGGTTAGTGAATTCGATATGCTTCCTGGTAGTTCTCATGTTCATTGGTGGGGTGCTCTTGGTGA...

CDS

Download CDS FASTA

2727 bp · LXL04_015452|LXL04_015452|OH1004|CDS

ATGGCGATCTCACAGTCTTCTTTGCTAGTTTCAATATGGTTTGTCATATACCTATTAGTATTCCCCAAATTAGATCCGGTTTCTGCTCAAAGTTGCCCCCAATCCAACACTTCTCTACTTAATTTCACTACCCAGTTTGTTATGGCTCAGCATCAACTAAGAGGGTCTTTTAGCATAATCAATGATTGTTCTTTTAGGGTTAGTGAATTCGATATGCTTCCTGGTAGTTCTCATGTTCATTGGTGGGGTGCTCTTGGTGA...

Protein

Download Protein FASTA

908 aa · LXL04_015452|LXL04_015452|OH1004|PROTEIN

MAISQSSLLVSIWFVIYLLVFPKLDPVSAQSCPQSNTSLLNFTTQFVMAQHQLRGSFSIINDCSFRVSEFDMLPGSSHVHWWGALGDDYENLTSGFVISEDQLNTTTYKNETFTVNLMKNITWDQIKVVSVWDTSMASDFGHVLLQNTEDLPPDPSNSSLKIHQEPTMFENCKVLSDTFRLRWTLNEDKNLIDIGLEGAIGIQNYMAFGWTEPNHEHDHMLNADVAFTGFTEEGVPFADDYYITKYSECIKNENKQFEGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015452`
TK1151 ID	TkA02G330450
OH-1004 ID	LXL04_015452
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	95.700
Protein coverage (%)	TK1151 99.153 / OH-1004 65.969 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015452

Location Chr03:72495650-72498376 (+)

Description Similar to At5g54830: Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54830`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release
`At3g61750`	May act as a catecholamine-responsive trans-membrane electron transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015452 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006879 intracellular iron ion homeostasis Biological Process

GO:0006997 nucleus organization Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005700 polytene chromosome Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT3G61750

ath:AT5G54830

ddi:DDB_G0279437

dme:Dmel_CG43161

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.499

Rank 1 · LXL04_015452 · OH-1004

Lysosome / Vacuole0.211

Rank 2 · LXL04_015452 · OH-1004

Cytoplasm0.149

Rank 3 · LXL04_015452 · OH-1004

Endoplasmic reticulum0.118

Rank 4 · LXL04_015452 · OH-1004

Golgi apparatus0.098

Rank 5 · LXL04_015452 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10517.15DM1345-145 aa

PF03351.23DOMON177-253 aa

PF25489.2At5g54830383-508 aa

PF03351.23DOMON522-647 aa

PF03188.22Cytochrom_B561690-816 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015452	`PF10517.15`	DM13	45	145	3.5e-14	54.0
LXL04_015452	`PF03351.23`	DOMON	177	253	2.3e-39	135.1
LXL04_015452	`PF25489.2`	At5g54830	383	508	1.7e-68	229.2
LXL04_015452	`PF03351.23`	DOMON	522	647	2.3e-39	135.1
LXL04_015452	`PF03188.22`	Cytochrom_B561	690	816	6.8e-08	33.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFU6`	Arabidopsis thaliana	Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830	58.450%	Swiss-Prot	strong database homology
`Q9M363`	Arabidopsis thaliana	Cytochrome b561 and DOMON domain-containing protein At3g61750	21.769%	Swiss-Prot	weak database homology

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