LXL04_015424 | RubberDandelionOmics

Gene overview

LXL04_015424

Reference: OH-1004 Chr: Chr03 Coordinates: 71578740-71585108 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

972 bp · LXL04_015424|LXL04_015424|OH1004|cDNA

atgggaagaacACCTTGTTGTGAAAAGGAAGGGATACGAAGAGGGAGGTGGACTGCTGAAGAAGATGAAACATTGGTCAAATACATTCAACACAATGGTGAAGGTTCTTGGAGGTCTTTGCCCAAAAATGCAGGTTTGTCAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATCAATTATCTACGAGGGGACCTAAAGAGGGGCAATATCActgcagaagaagaagaaatgatCGTCAAGTTACATGGATCCTTAGGAAA...

CDS

Download CDS FASTA

972 bp · LXL04_015424|LXL04_015424|OH1004|CDS

ATGGGAAGAACACCTTGTTGTGAAAAGGAAGGGATACGAAGAGGGAGGTGGACTGCTGAAGAAGATGAAACATTGGTCAAATACATTCAACACAATGGTGAAGGTTCTTGGAGGTCTTTGCCCAAAAATGCAGGTTTGTCAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATCAATTATCTACGAGGGGACCTAAAGAGGGGCAATATCACTGCAGAAGAAGAAGAAATGATCGTCAAGTTACATGGATCCTTAGGAAA...

Protein

Download Protein FASTA

323 aa · LXL04_015424|LXL04_015424|OH1004|PROTEIN

MGRTPCCEKEGIRRGRWTAEEDETLVKYIQHNGEGSWRSLPKNAGLSRCGKSCRLRWINYLRGDLKRGNITAEEEEMIVKLHGSLGNRWSVIASHLPGRTDNEIKNYWNSHLSRKMYRYFRGKDDLALNSIKITDVIHAKPKIGRVSRCMAKKYNKNRVATDIKSTPRPSNNKLAPRTIINKDKTDDHGIGSYSVPSKKIVVTEDNKVAEIEWNFQEVRENQELGPNEFCFQDDEMMDITRYLGSGVLSIHDEEQAGKIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015424`
TK1151 ID	TkA02G334740
OH-1004 ID	LXL04_015424
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.500
Protein coverage (%)	TK1151 97.596 / OH-1004 62.848 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015424

Location Chr03:71578740-71585108 (+)

Description Similar to MYB12: Transcription factor MYB12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47460`	Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis.	The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis.2005 · DOI: 10.1104/pp.104.058032 Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x
`At5g49330`	Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis.	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x
`At3g62610`	Modulates overall growth by reducing the proliferation activity of meristematic cells and delaying development.	Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.2007 · DOI: 10.1111/j.1365-313x.2007.03078.x The AtMYB11 gene from Arabidopsis is expressed in meristematic cells and modulates growth in planta and organogenesis in vitro.2008 · DOI: 10.1093/jxb/ern027 The Arabidopsis bZIP transcription factor HY5 regulates expression of the PFG1/MYB12 gene in response to light and ultraviolet-B radiation.2010 · DOI: 10.1111/j.1365-3040.2009.02061.x Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.2010 · DOI: 10.1111/j.1469-8137.2010.03421.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015424 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006950 response to stress Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009733 response to auxin Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0010224 response to UV-B Biological Process

GO:0043477 pigment biosynthetic process involved in pigment accumulation Biological Process

GO:0043480 pigment accumulation in tissues Biological Process

KEGG gene cross-reference

ath:AT2G47460

ath:AT3G62610

ath:AT5G49330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.966

Rank 1 · LXL04_015424 · OH-1004

Cytoplasm0.090

Rank 2 · LXL04_015424 · OH-1004

Cell membrane0.024

Rank 3 · LXL04_015424 · OH-1004

Endoplasmic reticulum0.012

Rank 4 · LXL04_015424 · OH-1004

Plastid0.011

Rank 5 · LXL04_015424 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding14-61 aa

PF13921.13Myb_DNA-bind_617-77 aa

PF00249.38Myb_DNA-binding67-112 aa

PF13921.13Myb_DNA-bind_671-118 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015424	`PF00249.38`	Myb_DNA-binding	14	61	2.5e-35	121.0
LXL04_015424	`PF13921.13`	Myb_DNA-bind_6	17	77	2.6e-20	73.1
LXL04_015424	`PF00249.38`	Myb_DNA-binding	67	112	2.5e-35	121.0
LXL04_015424	`PF13921.13`	Myb_DNA-bind_6	71	118	2.6e-20	73.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O22264`	Arabidopsis thaliana	Transcription factor MYB12	67.500%	Swiss-Prot	weak database homology
`Q9FJ07`	Arabidopsis thaliana	Transcription factor MYB111	61.413%	Swiss-Prot	moderate database homology
`Q9LZK4`	Arabidopsis thaliana	Transcription factor MYB11	81.818%	Swiss-Prot	weak database homology

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