LXL04_014292 | RubberDandelionOmics

Gene overview

LXL04_014292

Reference: OH-1004 Chr: Chr03 Coordinates: 45552384-45557177 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1818 bp · LXL04_014292|LXL04_014292|OH1004|cDNA

ATGTTCGGAAGGGACAGCGCCGGCGTCCTCTGGAGAAGATGGGCCGGAATCGGCGCCGGGAAAAGAGTCCGAGTTTTGCTGAATGTTGCTGAAATACCTGTTTTtgctgatgatgatgatggcgATTGTGCGGAGGTAGCTGGTATGGGAGAAGGGCAATCAAAAGAAACAGGAAAACGCAAAATTGAaattcgtCTCAGTAGTGTCCAAATCCATCAATGGCGGAAGGTCAGCTTCAGCGAGGGAGAAGGCCCGGAAGG...

CDS

Download CDS FASTA

1818 bp · LXL04_014292|LXL04_014292|OH1004|CDS

ATGTTCGGAAGGGACAGCGCCGGCGTCCTCTGGAGAAGATGGGCCGGAATCGGCGCCGGGAAAAGAGTCCGAGTTTTGCTGAATGTTGCTGAAATACCTGTTTTTGCTGATGATGATGATGGCGATTGTGCGGAGGTAGCTGGTATGGGAGAAGGGCAATCAAAAGAAACAGGAAAACGCAAAATTGAAATTCGTCTCAGTAGTGTCCAAATCCATCAATGGCGGAAGGTCAGCTTCAGCGAGGGAGAAGGCCCGGAAGG...

Protein

Download Protein FASTA

605 aa · LXL04_014292|LXL04_014292|OH1004|PROTEIN

MFGRDSAGVLWRRWAGIGAGKRVRVLLNVAEIPVFADDDDGDCAEVAGMGEGQSKETGKRKIEIRLSSVQIHQWRKVSFSEGEGPEGDQGEEQTDTPFFPSVMFPPTSPIPFPAGTVTSSRLSSMNRYSNLDGNTSGLLLVPTNAAKFTHKRFELRWLRIWFSIGMGFSLTTLIGVTVIILMESAKALNLFNGISWLNSILNGSILGFYSSVFKYSISVADIGYMCISSIISVSIHELGHALAATRLLHSISIFFCIRFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014292`
TK1151 ID	TkA02G441250
OH-1004 ID	LXL04_014292
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	95.000
Protein coverage (%)	TK1151 100.000 / OH-1004 72.727 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014292

Location Chr03:45552384-45557177 (+)

Description Similar to S2P: Membrane-bound transcription factor site-2 protease homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g20310`	Metalloprotease that catalyzes the second step (site-2 cleavage) in the proteolytic activation of various factors, after site-1 cleavage.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014292 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0006607 NLS-bearing protein import into nucleus Biological Process

GO:0007095 mitotic G2 DNA damage checkpoint signaling Biological Process

GO:0008203 cholesterol metabolic process Biological Process

GO:0009651 response to salt stress Biological Process

GO:0030968 endoplasmic reticulum unfolded protein response Biological Process

GO:0031293 membrane protein intracellular domain proteolysis Biological Process

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0036500 ATF6-mediated unfolded protein response Biological Process

GO:0045540 regulation of cholesterol biosynthetic process Biological Process

GO:0045542 positive regulation of cholesterol biosynthetic process Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

KEGG gene cross-reference

ath:AT4G20310

bta:533134

cge:100689085

hsa:51360

mmu:270669

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.405

Rank 1 · LXL04_014292 · OH-1004

Golgi apparatus0.205

Rank 2 · LXL04_014292 · OH-1004

Nucleus0.172

Rank 3 · LXL04_014292 · OH-1004

Lysosome / Vacuole0.153

Rank 4 · LXL04_014292 · OH-1004

Cytoplasm0.135

Rank 5 · LXL04_014292 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02163.29Peptidase_M50229-566 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014292	`PF02163.29`	Peptidase_M50	229	566	5.1e-16	59.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JUU5`	Arabidopsis thaliana	Membrane-bound transcription factor site-2 protease homolog	41.079%	Swiss-Prot	moderate database homology

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