LXL04_013794 | RubberDandelionOmics

Gene overview

LXL04_013794

Reference: OH-1004 Chr: Chr03 Coordinates: 36078494-36081272 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1692 bp · LXL04_013794|LXL04_013794|OH1004|cDNA

ATGGAGAAGCGGATAGCTGCTGCTACTGCTTCTTATCGCCTACTCACCCAAAAGAAGTACGCCTCTAAAAAAATTCTTCATCATCGGCGATTGATCCCTAATTTCAATGAAGTTCACCGATCATGTTCAAATTCAGGAGGTTTCATGCCTCATTGTGGCTCTGCGCCTATCCAGAAATTCCCTCGACGTGATCGTCAGAAATCTTCCCTAATTAACATACAGAATATACCTGGAATCCAGCACAGAACTTTCGGTTCAGC...

CDS

Download CDS FASTA

1692 bp · LXL04_013794|LXL04_013794|OH1004|CDS

ATGGAGAAGCGGATAGCTGCTGCTACTGCTTCTTATCGCCTACTCACCCAAAAGAAGTACGCCTCTAAAAAAATTCTTCATCATCGGCGATTGATCCCTAATTTCAATGAAGTTCACCGATCATGTTCAAATTCAGGAGGTTTCATGCCTCATTGTGGCTCTGCGCCTATCCAGAAATTCCCTCGACGTGATCGTCAGAAATCTTCCCTAATTAACATACAGAATATACCTGGAATCCAGCACAGAACTTTCGGTTCAGC...

Protein

Download Protein FASTA

563 aa · LXL04_013794|LXL04_013794|OH1004|PROTEIN

MEKRIAAATASYRLLTQKKYASKKILHHRRLIPNFNEVHRSCSNSGGFMPHCGSAPIQKFPRRDRQKSSLINIQNIPGIQHRTFGSAIIQRNPLFSTLNHDDIIYFEKTLGVKNVIQDDEELETANTDWMHKFKGSSKLMLLPENTDQLSQILKHCNSRHLAVVPQGGNTGLVGGSVPVFDEVIINTRRMNNIISFDEVSGVLVCEAGCILENLITFLDQKGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013794`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_013794

Location Chr03:36078494-36081272 (-)

Description Similar to D2HGDH: D-2-hydroxyglutarate dehydrogenase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36400`	May catalyze the oxidation of (R)-2-hydroxyglutarate to 2-oxoglutarate.	Two D-2-hydroxy-acid dehydrogenases in Arabidopsis thaliana with catalytic capacities to participate in the last reactions of the methylglyoxal and beta-oxidation pathways.2009 · DOI: 10.1074/jbc.m109.021253

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0187200`	Catalyzes the oxidation of D-2-hydroxyglutarate to alpha-ketoglutarate.	No verified direct reference in this release
`UniProt: B8B7X6`	Catalyzes the oxidation of D-2-hydroxyglutarate to alpha-ketoglutarate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013794 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006089 lactate metabolic process Biological Process

GO:0006103 2-oxoglutarate metabolic process Biological Process

GO:0006108 malate metabolic process Biological Process

GO:0009853 photorespiration Biological Process

GO:0010042 response to manganese ion Biological Process

GO:0010043 response to zinc ion Biological Process

GO:0010230 alternative respiration Biological Process

GO:0031648 protein destabilization Biological Process

GO:0032025 response to cobalt ion Biological Process

GO:1901275 tartrate metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

KEGG gene cross-reference

ath:AT4G36400

dre:565889

hsa:728294

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.878

Rank 1 · LXL04_013794 · OH-1004

Cytoplasm0.065

Rank 2 · LXL04_013794 · OH-1004

Plastid0.060

Rank 3 · LXL04_013794 · OH-1004

Nucleus0.039

Rank 4 · LXL04_013794 · OH-1004

Peroxisome0.019

Rank 5 · LXL04_013794 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565.29FAD_binding_4139-274 aa

PF02913.25FAD-oxidase_C315-555 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013794	`PF01565.29`	FAD_binding_4	139	274	1.2e-34	119.7
LXL04_013794	`PF02913.25`	FAD-oxidase_C	315	555	8.6e-59	199.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23240`	Arabidopsis thaliana	D-2-hydroxyglutarate dehydrogenase, mitochondrial	70.524%	Swiss-Prot	strong database homology
`Q7XI14`	Oryza sativa subsp. japonica	Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial	68.000%	Swiss-Prot	strong database homology
`B8B7X6`	Oryza sativa subsp. indica	Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial	67.800%	Swiss-Prot	strong database homology

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