LXL04_012414 | RubberDandelionOmics

Gene overview

LXL04_012414

Reference: OH-1004 Chr: Chr03 Coordinates: 11844503-11845986 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

789 bp · LXL04_012414|LXL04_012414|OH1004|cDNA

ATGTGGCCTCTACATATCCTTTTAAGCAAGCTCCTAAAATCAGAAGAACATGATGATCATGAAGAGGAACACAATATAAGTTTTTCTGAACCATATGATTTCAAACCATCACTGAAAAATAGGAACAAGAGTCACTCACACTTTGTGGAAGTCCCACATATAAAACAATTACGCTCATGGGATTGTGGTCTTGTTTGTGTTCTAATGATCTTAAGAACACTTGGTCTCAACCATTTTGATATTCAAGATTTAGAGGACCT...

CDS

Download CDS FASTA

789 bp · LXL04_012414|LXL04_012414|OH1004|CDS

ATGTGGCCTCTACATATCCTTTTAAGCAAGCTCCTAAAATCAGAAGAACATGATGATCATGAAGAGGAACACAATATAAGTTTTTCTGAACCATATGATTTCAAACCATCACTGAAAAATAGGAACAAGAGTCACTCACACTTTGTGGAAGTCCCACATATAAAACAATTACGCTCATGGGATTGTGGTCTTGTTTGTGTTCTAATGATCTTAAGAACACTTGGTCTCAACCATTTTGATATTCAAGATTTAGAGGACCT...

Protein

Download Protein FASTA

262 aa · LXL04_012414|LXL04_012414|OH1004|PROTEIN

MWPLHILLSKLLKSEEHDDHEEEHNISFSEPYDFKPSLKNRNKSHSHFVEVPHIKQLRSWDCGLVCVLMILRTLGLNHFDIQDLEDLCCTTSIWTVDLAYLLQKLSIRFSYYTVTIGANPDFSVETFYKEQLANDIERVDMLFQRSVQEGIKIECRSIKGEEIIFFILSGKYVVIALVDQRILSQSWKEDVHMPQFYNSTAAYTGHYVVICGYDAHTDEFEIRDPASSRKSDRISSKCLEEARKSYGTDEDILLVSLVDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012414`
TK1151 ID	TkA02G566370
OH-1004 ID	LXL04_012414
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012414

Location Chr03:11844503-11845986 (+)

Description Similar to GC1: Guanylyl cyclase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05930`	Magnesium-dependent guanylyl cyclase that catalyzes the formation of guanosine 3',5'-cyclic monophosphate (cGMP) from guanosine 5'-triphosphate (GTP).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012414 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006182 cGMP biosynthetic process Biological Process

GO:0051591 response to cAMP Biological Process

GO:0005634 nucleus Cellular Component

GO:0004383 guanylate cyclase activity Molecular Function

KEGG gene cross-reference

ath:AT5G05930

hsa:83606

mmu:68778

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.525

Rank 1 · LXL04_012414 · OH-1004

Nucleus0.302

Rank 2 · LXL04_012414 · OH-1004

Golgi apparatus0.119

Rank 3 · LXL04_012414 · OH-1004

Endoplasmic reticulum0.118

Rank 4 · LXL04_012414 · OH-1004

Mitochondrion0.106

Rank 5 · LXL04_012414 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13529.14Peptidase_C39_250-246 aa

PF09778.16Guanylate_cyc_251-255 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012414	`PF13529.14`	Peptidase_C39_2	50	246	4.9e-08	34.2
LXL04_012414	`PF09778.16`	Guanylate_cyc_2	51	255	2.7e-73	246.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L870`	Arabidopsis thaliana	Guanylyl cyclase 1	53.333%	Swiss-Prot	strong database homology

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