Gene Card
Gene overview
cDNA / CDS / Protein Sequences
588 bp · LXL04_012247|LXL04_012247|OH1004|cDNA
ATGATCTTTCTTGAGGAGTGTATAAGTGAGCTAAGAAAAGGGACTCATTTCACTAAGGGTGCTTCCGTGCTTGGGCATTCTTTTGTCAAAAGGACAACCACCAGAAAATGGCGGAGAAACTGGCACCTGAGAAACGCCACAGCTTTTTCCATGGAAGTATGTCAGAAGGTTTTTGAATGGGATCAAACTCTAGATGAAGTAAATATGTACATCACTTTGCCTAAAGAAGTTCCCACCAAGCTCTTTTACTGCAAAGTTCA...
588 bp · LXL04_012247|LXL04_012247|OH1004|CDS
ATGATCTTTCTTGAGGAGTGTATAAGTGAGCTAAGAAAAGGGACTCATTTCACTAAGGGTGCTTCCGTGCTTGGGCATTCTTTTGTCAAAAGGACAACCACCAGAAAATGGCGGAGAAACTGGCACCTGAGAAACGCCACAGCTTTTTCCATGGAAGTATGTCAGAAGGTTTTTGAATGGGATCAAACTCTAGATGAAGTAAATATGTACATCACTTTGCCTAAAGAAGTTCCCACCAAGCTCTTTTACTGCAAAGTTCA...
Protein
Download Protein FASTA195 aa · LXL04_012247|LXL04_012247|OH1004|PROTEIN
MIFLEECISELRKGTHFTKGASVLGHSFVKRTTTRKWRRNWHLRNATAFSMEVCQKVFEWDQTLDEVNMYITLPKEVPTKLFYCKVQSKHVEVGIEGNPPYLNHDLSSPVKTDSSFWTIEDDTLHITLQKRDKGQTWSSPIQGQGQLDPLAADLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIKSD
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012247 |
|---|---|
| TK1151 ID | TkA02G578610 |
| OH-1004 ID | LXL04_012247 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 89.241 / OH-1004 72.308Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012247 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:9057054-9058278 (-) | |||||||||
| Description | Similar to Nudcd2: NudC domain-containing protein 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006457 protein folding Biological Process GO:0006950 response to stress Biological Process GO:0009408 response to heat Biological Process GO:0009555 pollen development Biological Process GO:0009880 embryonic pattern specification Biological Process GO:0009965 leaf morphogenesis Biological Process GO:0010286 heat acclimation Biological Process GO:0010450 inflorescence meristem growth Biological Process GO:0032502 developmental process Biological Process GO:0048448 stamen morphogenesis Biological Process GO:0048461 flower structural organization Biological Process GO:0048833 specification of floral organ number Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT4G27890 ath:AT5G53400 hsa:134492 mmu:52653 rno:287199 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04969.23CS58-130 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012247 | PF04969.23 | CS | 58 | 130 | 9.1e-20 | 72.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.