LXL04_012149 | RubberDandelionOmics

Gene overview

LXL04_012149

Reference: OH-1004 Chr: Chr03 Coordinates: 7340577-7343624 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1047 bp · LXL04_012149|LXL04_012149|OH1004|cDNA

ATGGTTGTTAATCGGAGACATATTGCACAAATATTGGAGATGGAAAGTATCTCTACTAATCATGAGGATAACGAGTTTACCGTCTTAGCAAAGATAGTCCAACTCTATCATGGTTCTGGATGGTGTTATGCTTCATGCAGTAAATGCAACAAGAATTGGACAAGAAAACATGAAGCCAATTTCAACAAACCTGTTCTAGATGGAATATCGTGGTTGGTAAAAGAGAGGCCGGAAAGAGGCGCCAGAATTACTAATTGCGC...

CDS

Download CDS FASTA

1047 bp · LXL04_012149|LXL04_012149|OH1004|CDS

ATGGTTGTTAATCGGAGACATATTGCACAAATATTGGAGATGGAAAGTATCTCTACTAATCATGAGGATAACGAGTTTACCGTCTTAGCAAAGATAGTCCAACTCTATCATGGTTCTGGATGGTGTTATGCTTCATGCAGTAAATGCAACAAGAATTGGACAAGAAAACATGAAGCCAATTTCAACAAACCTGTTCTAGATGGAATATCGTGGTTGGTAAAAGAGAGGCCGGAAAGAGGCGCCAGAATTACTAATTGCGC...

Protein

Download Protein FASTA

348 aa · LXL04_012149|LXL04_012149|OH1004|PROTEIN

MVVNRRHIAQILEMESISTNHEDNEFTVLAKIVQLYHGSGWCYASCSKCNKNWTRKHEANFNKPVLDGISWLVKERPERGARITNCAGEELIGTAGASGDAAVVGWIAGVGVRKGGNEGIDGLSEGFEERIGKENRGLILTGWAPQVEILQHPAVGGFLSHCGWNSLLEAMTLQFIVYQAHCKSIDSKHQALKYLTFIQRRRSRTKMPPHGHHHHHHHHRHHHRRHHHHNPPPPPAPQHHHHHLPPPPPQRPTLAPANPH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012149`
TK1151 ID	TkA02G585270
OH-1004 ID	LXL04_012149
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	63.300
Protein coverage (%)	TK1151 35.252 / OH-1004 14.080 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012149

Location Chr03:7340577-7343624 (+)

Description Similar to UGT73C3: UDP-glycosyltransferase 73C3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36780`	UDP-glycosyltransferase 73C3.	No verified direct reference in this release
`At2g36770`	UDP-glycosyltransferase 73C4.	No verified direct reference in this release
`At4g34135`	Catalyzes the glycosylation of flavonoids from UDP-glucose.	No verified direct reference in this release
`At2g36750`	Involved in the O-glucosylation of trans-zeatin and dihydrozeatin.	N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200
`At4g34138`	Possesses low quercetin 3-O-glucosyltransferase and 7-O-glucosyltransferase activities in vitro.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012149 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0009636 response to toxic substance Biological Process

GO:0010224 response to UV-B Biological Process

GO:0051555 flavonol biosynthetic process Biological Process

GO:0051707 response to other organism Biological Process

GO:0009507 chloroplast Cellular Component

GO:0033836 flavonol 7-O-beta-glucosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0047893 flavonol 3-O-glucosyltransferase activity Molecular Function

GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity Molecular Function

GO:0050502 cis-zeatin O-beta-D-glucosyltransferase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G36750

ath:AT2G36770

ath:AT2G36780

ath:AT4G34135

ath:AT4G34138

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.365

Rank 1 · LXL04_012149 · OH-1004

Cytoplasm0.311

Rank 2 · LXL04_012149 · OH-1004

Cell membrane0.302

Rank 3 · LXL04_012149 · OH-1004

Endoplasmic reticulum0.117

Rank 4 · LXL04_012149 · OH-1004

Mitochondrion0.048

Rank 5 · LXL04_012149 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201.25UDPGT139-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012149	`PF00201.25`	UDPGT	139	171	4e-07	30.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZQ96`	Arabidopsis thaliana	UDP-glycosyltransferase 73C3	37.415%	Swiss-Prot	weak database homology
`Q9ZQ97`	Arabidopsis thaliana	UDP-glycosyltransferase 73C4	36.552%	Swiss-Prot	weak database homology
`Q94C57`	Arabidopsis thaliana	UDP-glucosyl transferase 73B2	33.728%	Swiss-Prot	weak database homology
`Q9ZQ99`	Arabidopsis thaliana	UDP-glycosyltransferase 73C1	37.241%	Swiss-Prot	weak database homology
`Q8VZE9`	Arabidopsis thaliana	UDP-glycosyltransferase 73B1	61.667%	Swiss-Prot	weak database homology

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